Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 AC244394.1-201ENST00000435000 1665 ntBASIC14.03□□□□□ -0.16
CCDC88CQ9P219 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 CD8B2-202ENST00000417670 633 ntBASIC14.03□□□□□ -0.16
CCDC88CQ9P219 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 AC005077.2-201ENST00000449786 690 ntBASIC14.03□□□□□ -0.16
CCDC88CQ9P219 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 AC022616.1-201ENST00000518688 554 ntBASIC14.03□□□□□ -0.16
CCDC88CQ9P219 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 AC005324.6-201ENST00000587972 613 ntBASIC14.03□□□□□ -0.16
CCDC88CQ9P219 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 GRK6P1-201ENST00000400595 1711 ntBASIC14.03□□□□□ -0.16
CCDC88CQ9P219 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC88CQ9P219 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 KRT18P36-201ENST00000411618 1276 ntBASIC14.02□□□□□ -0.16
CCDC88CQ9P219 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 AC152010.1-201ENST00000415779 2006 ntBASIC14.02□□□□□ -0.16
CCDC88CQ9P219 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 AC005962.1-201ENST00000584100 773 ntBASIC14.02□□□□□ -0.16
CCDC88CQ9P219 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC88CQ9P219 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 SHC1P1-201ENST00000425230 1745 ntBASIC14.02□□□□□ -0.17
CCDC88CQ9P219 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.02□□□□□ -0.17
CCDC88CQ9P219 AC026740.1-201ENST00000607068 791 ntBASIC14.02□□□□□ -0.17
CCDC88CQ9P219 AC007663.3-201ENST00000609632 465 ntBASIC14.02□□□□□ -0.17
CCDC88CQ9P219 AC244157.2-201ENST00000616239 1006 ntBASIC14.02□□□□□ -0.17
CCDC88CQ9P219 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms