Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.08□□□□□ -0.32
MMP28Q9H239 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 CNN2P2-201ENST00000443536 909 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 CNN2P3-201ENST00000450201 906 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 AC069262.1-201ENST00000539058 672 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC13.08□□□□□ -0.32
MMP28Q9H239 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 MIR4453-201ENST00000584019 89 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 AC097359.3-201ENST00000603982 1210 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 AL136317.3-201ENST00000618497 906 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.08□□□□□ -0.32
MMP28Q9H239 Z92544.3-201ENST00000624747 417 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 TP73-207ENST00000378290 1831 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.08□□□□□ -0.32
MMP28Q9H239 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.08□□□□□ -0.32
MMP28Q9H239 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 REXO1L4P-201ENST00000605109 1937 ntBASIC13.07□□□□□ -0.32
MMP28Q9H239 AC106818.1-201ENST00000623223 3242 ntBASIC13.07□□□□□ -0.32
MMP28Q9H239 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.07□□□□□ -0.32
MMP28Q9H239 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC13.07□□□□□ -0.32
MMP28Q9H239 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
MMP28Q9H239 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.07□□□□□ -0.32
MMP28Q9H239 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
MMP28Q9H239 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.07□□□□□ -0.32
MMP28Q9H239 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.07□□□□□ -0.32
MMP28Q9H239 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.07□□□□□ -0.32
MMP28Q9H239 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.07□□□□□ -0.32
MMP28Q9H239 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.07□□□□□ -0.32
MMP28Q9H239 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 DUT-210ENST00000559935 569 ntTSL 3 BASIC13.07□□□□□ -0.32
MMP28Q9H239 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.07□□□□□ -0.32
MMP28Q9H239 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
MMP28Q9H239 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
MMP28Q9H239 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.07□□□□□ -0.32
MMP28Q9H239 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
MMP28Q9H239 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
MMP28Q9H239 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.07□□□□□ -0.32
MMP28Q9H239 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
MMP28Q9H239 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms