Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 STX1A-203ENST00000395155 783 ntTSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 CSF2RBP1-201ENST00000447905 391 ntBASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AL035414.1-201ENST00000451327 857 ntBASIC11.38□□□□□ -0.59
CCDC140Q96MF4 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 IGHV3-71-201ENST00000523324 359 ntBASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AC010326.4-201ENST00000604665 891 ntBASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AC133552.6-201ENST00000613406 534 ntBASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AC027601.3-201ENST00000622907 509 ntBASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CCDC140Q96MF4 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 E2F3P2-201ENST00000447755 1422 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 AC244107.1-201ENST00000442033 332 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 YBX1P6-201ENST00000442962 1002 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 KRT223P-202ENST00000449164 1292 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 AC027237.1-201ENST00000560942 655 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 AP005482.1-201ENST00000563722 1273 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 MIR4741-201ENST00000579822 90 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 AC132192.2-201ENST00000596206 1147 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 AC017083.2-201ENST00000608069 979 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 MIR6805-201ENST00000615055 62 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 COX11-210ENST00000639671 696 ntBASIC11.37□□□□□ -0.59
CCDC140Q96MF4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CCDC140Q96MF4 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms