Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 CROCCP4-201ENST00000457096 498 ntBASIC14.2□□□□□ -0.14
VMP1Q96GC9 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 FTH1P14-201ENST00000482930 551 ntBASIC14.2□□□□□ -0.14
VMP1Q96GC9 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 AL359881.2-201ENST00000602973 570 ntBASIC14.2□□□□□ -0.14
VMP1Q96GC9 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 AC012508.2-201ENST00000567613 1472 ntBASIC14.19□□□□□ -0.14
VMP1Q96GC9 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 AC007551.1-201ENST00000457394 519 ntBASIC14.19□□□□□ -0.14
VMP1Q96GC9 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 AC104989.1-201ENST00000519711 778 ntBASIC14.19□□□□□ -0.14
VMP1Q96GC9 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 AC145423.3-201ENST00000615987 467 ntBASIC14.19□□□□□ -0.14
VMP1Q96GC9 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 PDIA3P1-201ENST00000471856 1510 ntBASIC14.19□□□□□ -0.14
VMP1Q96GC9 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.19□□□□□ -0.14
VMP1Q96GC9 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VMP1Q96GC9 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms