Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 AC093433.1-201ENST00000458048 571 ntBASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 AP001063.1-201ENST00000568332 529 ntBASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 AC092364.2-202ENST00000597012 1073 ntBASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLHC1Q8NHS4 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AC236430.1-201ENST00000402231 743 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AL162726.2-201ENST00000438986 1017 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 RN7SL204P-201ENST00000582831 262 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AC011840.2-201ENST00000563063 1520 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 INE2-201ENST00000630399 1874 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AC089987.1-201ENST00000551654 2209 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 AC215219.1-201ENST00000400706 1817 ntBASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.18□□□□□ -0.14
CLHC1Q8NHS4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 AL138725.1-201ENST00000407347 1314 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 MRPL37P1-201ENST00000592451 1337 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 BEND3P1-201ENST00000421591 1944 ntBASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLHC1Q8NHS4 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms