Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 AF274858.1-201ENST00000406288 372 ntBASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 HNRNPA1P42-201ENST00000458678 957 ntBASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 AC006529.1-201ENST00000459978 637 ntBASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC88AQ3V6T2 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 AC067931.2-201ENST00000623655 2003 ntBASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 AL512599.1-201ENST00000430724 685 ntBASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 LINC00244-201ENST00000625073 613 ntBASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
CCDC88AQ3V6T2 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 GOLGA6L16P-201ENST00000441780 1299 ntBASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 BPIFB5P-201ENST00000457066 1099 ntBASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 SNORA57-201ENST00000383870 149 ntBASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 PPP1R2P4-201ENST00000424051 595 ntBASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 APOC1-209ENST00000592885 562 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 NAV1-210ENST00000593583 726 ntBASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC88AQ3V6T2 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC88AQ3V6T2 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms