Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3AP84243 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 AC009093.10-201ENST00000641956 1442 ntBASIC13.16□□□□□ -0.3
H3F3AP84243 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3AP84243 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 RPS2P32-201ENST00000439199 892 ntBASIC13.16□□□□□ -0.3
H3F3AP84243 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.16□□□□□ -0.3
H3F3AP84243 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.16□□□□□ -0.3
H3F3AP84243 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.16□□□□□ -0.3
H3F3AP84243 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3AP84243 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3AP84243 MIR4783-201ENST00000580343 82 ntBASIC13.16□□□□□ -0.3
H3F3AP84243 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.16□□□□□ -0.3
H3F3AP84243 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 INTS4P1-203ENST00000641008 3683 ntBASIC13.16□□□□□ -0.3
H3F3AP84243 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3AP84243 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
H3F3AP84243 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.16□□□□□ -0.3
H3F3AP84243 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.16□□□□□ -0.3
H3F3AP84243 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
H3F3AP84243 AC215219.1-201ENST00000400706 1817 ntBASIC13.16□□□□□ -0.3
H3F3AP84243 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.3
H3F3AP84243 BX640514.1-201ENST00000583223 1918 ntBASIC13.15□□□□□ -0.3
H3F3AP84243 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 AL354877.1-201ENST00000424412 413 ntBASIC13.15□□□□□ -0.3
H3F3AP84243 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 Z93015.1-201ENST00000451718 390 ntBASIC13.15□□□□□ -0.3
H3F3AP84243 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.15□□□□□ -0.3
H3F3AP84243 RPSAP36-202ENST00000494591 1261 ntBASIC13.15□□□□□ -0.3
H3F3AP84243 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.15□□□□□ -0.3
H3F3AP84243 RN7SL560P-201ENST00000577943 264 ntBASIC13.15□□□□□ -0.3
H3F3AP84243 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 AC009542.2-202ENST00000619004 1067 ntBASIC13.15□□□□□ -0.3
H3F3AP84243 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 AC026748.1-201ENST00000624349 3251 ntBASIC13.15□□□□□ -0.3
H3F3AP84243 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.15□□□□□ -0.3
H3F3AP84243 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
H3F3AP84243 AC023908.3-201ENST00000564211 3047 ntBASIC13.15□□□□□ -0.3
H3F3AP84243 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.15□□□□□ -0.3
H3F3AP84243 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
H3F3AP84243 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.15□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms