Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 TMEM14DP-201ENST00000422205 345 ntBASIC11.93□□□□□ -0.5
CX3CL1P78423 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 AC245100.3-201ENST00000441281 285 ntBASIC11.93□□□□□ -0.5
CX3CL1P78423 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC11.93□□□□□ -0.5
CX3CL1P78423 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC11.93□□□□□ -0.5
CX3CL1P78423 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC11.93□□□□□ -0.5
CX3CL1P78423 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC11.93□□□□□ -0.5
CX3CL1P78423 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CX3CL1P78423 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC11.93□□□□□ -0.5
CX3CL1P78423 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC11.93□□□□□ -0.5
CX3CL1P78423 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC11.93□□□□□ -0.5
CX3CL1P78423 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC11.93□□□□□ -0.5
CX3CL1P78423 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CX3CL1P78423 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 AL138709.1-201ENST00000614840 1693 ntBASIC11.93□□□□□ -0.5
CX3CL1P78423 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CX3CL1P78423 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CX3CL1P78423 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC11.93□□□□□ -0.5
CX3CL1P78423 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
CX3CL1P78423 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC11.92□□□□□ -0.5
CX3CL1P78423 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
CX3CL1P78423 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 DKFZP434A062-201ENST00000573103 5021 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
CX3CL1P78423 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 TNN-203ENST00000622870 3719 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 API5-203ENST00000455725 2257 ntTSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 AC092933.1-201ENST00000393644 945 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC11.92□□□□□ -0.5
CX3CL1P78423 C2orf27AP3-201ENST00000434123 579 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 PNKD-204ENST00000436005 978 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC11.92□□□□□ -0.5
CX3CL1P78423 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC11.92□□□□□ -0.5
CX3CL1P78423 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC11.92□□□□□ -0.5
CX3CL1P78423 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.92□□□□□ -0.5
CX3CL1P78423 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC11.92□□□□□ -0.5
CX3CL1P78423 RN7SL48P-201ENST00000579283 293 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 AC004466.1-201ENST00000599515 1080 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 AL354718.3-201ENST00000616414 581 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 AC132938.4-201ENST00000623835 848 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 CR382287.1-201ENST00000623954 586 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 TCAF1P1-201ENST00000414990 2232 ntBASIC11.92□□□□□ -0.5
CX3CL1P78423 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC11.92□□□□□ -0.5
CX3CL1P78423 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC11.92□□□□□ -0.5
CX3CL1P78423 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
CX3CL1P78423 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms