Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC10.43□□□□□ -0.74
CKS1BP61024 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
CKS1BP61024 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC10.43□□□□□ -0.74
CKS1BP61024 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC10.43□□□□□ -0.74
CKS1BP61024 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC10.43□□□□□ -0.74
CKS1BP61024 FXR1-221ENST00000491674 365 ntTSL 2 BASIC10.43□□□□□ -0.74
CKS1BP61024 PP7080-204ENST00000510714 601 ntTSL 3 BASIC10.43□□□□□ -0.74
CKS1BP61024 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC10.43□□□□□ -0.74
CKS1BP61024 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC10.43□□□□□ -0.74
CKS1BP61024 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC10.43□□□□□ -0.74
CKS1BP61024 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 SPIB-207ENST00000597855 564 ntTSL 4 BASIC10.43□□□□□ -0.74
CKS1BP61024 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC10.43□□□□□ -0.74
CKS1BP61024 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC10.43□□□□□ -0.74
CKS1BP61024 CAND2-206ENST00000626378 333 ntTSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
CKS1BP61024 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC10.43□□□□□ -0.74
CKS1BP61024 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
CKS1BP61024 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 TNK1-201ENST00000570896 3122 ntAPPRIS P3 TSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 PLEC-208ENST00000436759 14787 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 SYNM-203ENST00000560674 5908 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 OFD1-203ENST00000380567 3736 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC10.43□□□□□ -0.74
CKS1BP61024 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC10.43□□□□□ -0.74
CKS1BP61024 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 PTPRS-202ENST00000353284 4518 ntTSL 5 BASIC10.43□□□□□ -0.74
CKS1BP61024 RBM33-203ENST00000341148 7058 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
CKS1BP61024 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 VASH2-203ENST00000366965 3572 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 SMG8-202ENST00000543872 3477 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 PCDHB19P-202ENST00000625133 2914 ntBASIC10.42□□□□□ -0.74
CKS1BP61024 ILF3-202ENST00000407004 3671 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 SCN8A-209ENST00000627620 5943 ntAPPRIS ALT1 TSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 ACO2-202ENST00000396512 2811 ntTSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 AC004241.5-201ENST00000623870 2448 ntBASIC10.42□□□□□ -0.74
CKS1BP61024 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 PCDHB4-201ENST00000194152 3825 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
CKS1BP61024 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
CKS1BP61024 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC10.42□□□□□ -0.74
CKS1BP61024 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC10.42□□□□□ -0.74
CKS1BP61024 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC10.42□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms