Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MROH4P-201ENST00000431302 1578 ntBASIC12.53□□□□□ -0.4
USF1P22415 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12.53□□□□□ -0.4
USF1P22415 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
USF1P22415 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 SDCCAG3P2-201ENST00000326105 1023 ntBASIC12.53□□□□□ -0.4
USF1P22415 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
USF1P22415 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC12.53□□□□□ -0.4
USF1P22415 HINT2P1-201ENST00000419438 481 ntBASIC12.53□□□□□ -0.4
USF1P22415 HLA-K-203ENST00000430151 1046 ntBASIC12.53□□□□□ -0.4
USF1P22415 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 RNMTL1P1-201ENST00000454103 560 ntBASIC12.53□□□□□ -0.4
USF1P22415 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 IMP3P2-201ENST00000489760 475 ntBASIC12.53□□□□□ -0.4
USF1P22415 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.53□□□□□ -0.4
USF1P22415 AC022217.1-201ENST00000521069 738 ntBASIC12.53□□□□□ -0.4
USF1P22415 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC12.53□□□□□ -0.4
USF1P22415 CHMP4BP1-201ENST00000556017 588 ntBASIC12.53□□□□□ -0.4
USF1P22415 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 AC013355.1-201ENST00000562625 723 ntBASIC12.53□□□□□ -0.4
USF1P22415 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 SYT17-208ENST00000568433 812 ntTSL 3 BASIC12.53□□□□□ -0.4
USF1P22415 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC12.53□□□□□ -0.4
USF1P22415 AC097724.1-201ENST00000609581 426 ntBASIC12.53□□□□□ -0.4
USF1P22415 AL136301.1-201ENST00000615830 422 ntBASIC12.53□□□□□ -0.4
USF1P22415 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.53□□□□□ -0.4
USF1P22415 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 AC091951.1-201ENST00000512854 2465 ntBASIC12.53□□□□□ -0.4
USF1P22415 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 AP000593.2-201ENST00000542775 1433 ntBASIC12.53□□□□□ -0.4
USF1P22415 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.53□□□□□ -0.4
USF1P22415 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USF1P22415 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
USF1P22415 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.52□□□□□ -0.4
USF1P22415 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
USF1P22415 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
USF1P22415 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
USF1P22415 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
USF1P22415 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.52□□□□□ -0.4
USF1P22415 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
USF1P22415 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
USF1P22415 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
USF1P22415 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.52□□□□□ -0.4
USF1P22415 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
USF1P22415 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
USF1P22415 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
USF1P22415 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
USF1P22415 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.52□□□□□ -0.41
USF1P22415 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
USF1P22415 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.52□□□□□ -0.41
USF1P22415 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
USF1P22415 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 DPM3-202ENST00000368399 517 ntBASIC12.52□□□□□ -0.41
USF1P22415 AC104457.1-201ENST00000401024 814 ntBASIC12.52□□□□□ -0.41
USF1P22415 GGCT-203ENST00000409144 836 ntTSL 2 BASIC12.52□□□□□ -0.41
USF1P22415 HLA-DQB2-229ENST00000411527 1059 ntBASIC12.52□□□□□ -0.41
USF1P22415 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC12.52□□□□□ -0.41
USF1P22415 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC12.52□□□□□ -0.41
USF1P22415 SUPT4H1P2-201ENST00000501248 353 ntBASIC12.52□□□□□ -0.41
USF1P22415 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 AC100827.2-201ENST00000563214 1194 ntBASIC12.52□□□□□ -0.41
USF1P22415 RN7SL774P-201ENST00000577467 290 ntBASIC12.52□□□□□ -0.41
USF1P22415 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC12.52□□□□□ -0.41
USF1P22415 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
USF1P22415 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC12.52□□□□□ -0.41
USF1P22415 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.52□□□□□ -0.41
USF1P22415 AL136295.7-201ENST00000619226 1200 ntBASIC12.52□□□□□ -0.41
USF1P22415 AL353726.2-201ENST00000623259 884 ntBASIC12.52□□□□□ -0.41
USF1P22415 AC004923.1-202ENST00000642106 209 ntBASIC12.52□□□□□ -0.41
USF1P22415 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms