Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
SDC1P18827 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SDC1P18827 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SDC1P18827 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 KRT8P28-201ENST00000433288 1390 ntBASIC14.01□□□□□ -0.17
SDC1P18827 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.01□□□□□ -0.17
SDC1P18827 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.01□□□□□ -0.17
SDC1P18827 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 AL355864.2-201ENST00000447420 863 ntBASIC14.01□□□□□ -0.17
SDC1P18827 AL590640.2-201ENST00000457038 527 ntBASIC14.01□□□□□ -0.17
SDC1P18827 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 AC132938.4-201ENST00000623835 848 ntBASIC14.01□□□□□ -0.17
SDC1P18827 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.01□□□□□ -0.17
SDC1P18827 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.01□□□□□ -0.17
SDC1P18827 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
SDC1P18827 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SDC1P18827 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.01□□□□□ -0.17
SDC1P18827 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SDC1P18827 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
SDC1P18827 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14□□□□□ -0.17
SDC1P18827 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14□□□□□ -0.17
SDC1P18827 RN7SL837P-201ENST00000463010 287 ntBASIC14□□□□□ -0.17
SDC1P18827 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14□□□□□ -0.17
SDC1P18827 AC011495.1-201ENST00000498085 584 ntBASIC14□□□□□ -0.17
SDC1P18827 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14□□□□□ -0.17
SDC1P18827 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14□□□□□ -0.17
SDC1P18827 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14□□□□□ -0.17
SDC1P18827 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
SDC1P18827 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14□□□□□ -0.17
SDC1P18827 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14□□□□□ -0.17
SDC1P18827 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14□□□□□ -0.17
SDC1P18827 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14□□□□□ -0.17
SDC1P18827 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14□□□□□ -0.17
SDC1P18827 AL355385.1-201ENST00000606123 409 ntBASIC14□□□□□ -0.17
SDC1P18827 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14□□□□□ -0.17
SDC1P18827 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SDC1P18827 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
SDC1P18827 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14□□□□□ -0.17
SDC1P18827 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14□□□□□ -0.17
SDC1P18827 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDC1P18827 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
SDC1P18827 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms