Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KHSRPP1-201ENST00000427983 1768 ntBASIC14.71□□□□□ -0.05
COL6A3P12111 GOLGA8UP-201ENST00000527159 1755 ntBASIC14.71□□□□□ -0.05
COL6A3P12111 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A3P12111 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A3P12111 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.71□□□□□ -0.06
COL6A3P12111 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A3P12111 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.71□□□□□ -0.06
COL6A3P12111 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A3P12111 MIR648-201ENST00000385046 94 ntBASIC14.71□□□□□ -0.06
COL6A3P12111 RN7SL351P-201ENST00000469306 248 ntBASIC14.71□□□□□ -0.06
COL6A3P12111 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.71□□□□□ -0.06
COL6A3P12111 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC14.71□□□□□ -0.06
COL6A3P12111 AP002336.2-201ENST00000528607 539 ntTSL 5 BASIC14.71□□□□□ -0.06
COL6A3P12111 TLE2-205ENST00000586422 389 ntTSL 5 BASIC14.71□□□□□ -0.06
COL6A3P12111 RN7SL827P-201ENST00000607480 288 ntBASIC14.71□□□□□ -0.06
COL6A3P12111 AC022296.3-201ENST00000608823 403 ntBASIC14.71□□□□□ -0.06
COL6A3P12111 MIR7704-201ENST00000610524 59 ntBASIC14.71□□□□□ -0.06
COL6A3P12111 AC123912.6-201ENST00000612657 315 ntBASIC14.71□□□□□ -0.06
COL6A3P12111 AC090386.2-201ENST00000623010 1039 ntBASIC14.71□□□□□ -0.06
COL6A3P12111 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.71□□□□□ -0.06
COL6A3P12111 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
COL6A3P12111 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 AC069224.1-201ENST00000566372 1715 ntBASIC14.7□□□□□ -0.06
COL6A3P12111 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A3P12111 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 AC092573.1-201ENST00000433054 884 ntBASIC14.7□□□□□ -0.06
COL6A3P12111 ACTG1P23-201ENST00000437653 1074 ntBASIC14.7□□□□□ -0.06
COL6A3P12111 AC027277.1-201ENST00000535363 533 ntTSL 3 BASIC14.7□□□□□ -0.06
COL6A3P12111 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC14.7□□□□□ -0.06
COL6A3P12111 MIR4265-201ENST00000582152 99 ntBASIC14.7□□□□□ -0.06
COL6A3P12111 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
COL6A3P12111 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A3P12111 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A3P12111 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A3P12111 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A3P12111 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 MRPS16P3-201ENST00000415961 374 ntBASIC14.7□□□□□ -0.06
COL6A3P12111 AC074019.1-201ENST00000428788 1096 ntBASIC14.7□□□□□ -0.06
COL6A3P12111 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A3P12111 GIMD1-201ENST00000507153 654 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL6A3P12111 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC14.7□□□□□ -0.06
COL6A3P12111 AL132780.2-203ENST00000555294 589 ntTSL 4 BASIC14.7□□□□□ -0.06
COL6A3P12111 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
COL6A3P12111 AC232323.1-201ENST00000540724 2099 ntBASIC14.7□□□□□ -0.06
COL6A3P12111 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 NOC2LP2-201ENST00000407594 1944 ntBASIC14.7□□□□□ -0.06
COL6A3P12111 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A3P12111 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 GABPB1-206ENST00000543881 1450 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A3P12111 CST2-201ENST00000304725 748 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 RPL3P2-204ENST00000413027 1203 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 PLAC9P1-203ENST00000440031 223 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A3P12111 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A3P12111 IGKV2-28-201ENST00000482769 390 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
COL6A3P12111 AC010202.1-201ENST00000551181 405 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 FAM187B2P-201ENST00000577135 713 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
COL6A3P12111 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A3P12111 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A3P12111 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A3P12111 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A3P12111 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A3P12111 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
COL6A3P12111 AC253536.1-201ENST00000437021 315 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 RN7SL477P-201ENST00000488440 286 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A3P12111 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC14.69□□□□□ -0.06
COL6A3P12111 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A3P12111 AC068134.4-201ENST00000613365 122 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A3P12111 AC092115.1-201ENST00000566277 1402 ntBASIC14.69□□□□□ -0.06
COL6A3P12111 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms