Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.18□□□□□ -0.3
ZIC3O60481 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
ZIC3O60481 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.18□□□□□ -0.3
ZIC3O60481 CALR4P-201ENST00000431943 946 ntBASIC13.18□□□□□ -0.3
ZIC3O60481 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.18□□□□□ -0.3
ZIC3O60481 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 HIST2H2BC-201ENST00000498492 580 ntBASIC13.18□□□□□ -0.3
ZIC3O60481 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.18□□□□□ -0.3
ZIC3O60481 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.18□□□□□ -0.3
ZIC3O60481 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.18□□□□□ -0.3
ZIC3O60481 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 AC015802.1-201ENST00000588104 1449 ntBASIC13.18□□□□□ -0.3
ZIC3O60481 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
ZIC3O60481 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC3O60481 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
ZIC3O60481 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC3O60481 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
ZIC3O60481 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
ZIC3O60481 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
ZIC3O60481 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
ZIC3O60481 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 AL365209.1-201ENST00000624418 6473 ntBASIC13.17□□□□□ -0.3
ZIC3O60481 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.17□□□□□ -0.3
ZIC3O60481 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
ZIC3O60481 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
ZIC3O60481 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
ZIC3O60481 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
ZIC3O60481 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
ZIC3O60481 KRT18P36-201ENST00000411618 1276 ntBASIC13.17□□□□□ -0.3
ZIC3O60481 AC078875.1-201ENST00000431907 724 ntBASIC13.17□□□□□ -0.3
ZIC3O60481 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.17□□□□□ -0.3
ZIC3O60481 AC125604.1-201ENST00000496255 707 ntBASIC13.17□□□□□ -0.3
ZIC3O60481 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.17□□□□□ -0.3
ZIC3O60481 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.17□□□□□ -0.3
ZIC3O60481 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.17□□□□□ -0.3
ZIC3O60481 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.17□□□□□ -0.3
ZIC3O60481 AC026740.1-201ENST00000607068 791 ntBASIC13.17□□□□□ -0.3
ZIC3O60481 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.17□□□□□ -0.3
ZIC3O60481 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.17□□□□□ -0.3
ZIC3O60481 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.17□□□□□ -0.3
ZIC3O60481 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.17□□□□□ -0.3
ZIC3O60481 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.17□□□□□ -0.3
ZIC3O60481 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.17□□□□□ -0.3
ZIC3O60481 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.17□□□□□ -0.3
ZIC3O60481 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.17□□□□□ -0.3
ZIC3O60481 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
ZIC3O60481 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
ZIC3O60481 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms