Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 AC006455.2-201ENST00000429931 906 ntBASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 AL137784.2-201ENST00000607332 1000 ntBASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
PCDHGA1Q9Y5H4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PCDHGA1Q9Y5H4 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHGA1Q9Y5H4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.98■■□□□ 1.11
PCDHGA1Q9Y5H4 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PCDHGA1Q9Y5H4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.98■■□□□ 1.11
PCDHGA1Q9Y5H4 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.98■■□□□ 1.11
PCDHGA1Q9Y5H4 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.98■■□□□ 1.11
PCDHGA1Q9Y5H4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 AC135731.1-201ENST00000569415 2548 ntBASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
PCDHGA1Q9Y5H4 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 KRT18P5-201ENST00000436075 1291 ntBASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 SLC47A1P1-202ENST00000449666 945 ntBASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 AC126544.1-201ENST00000580842 1059 ntBASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 AL121749.1-202ENST00000609313 2153 ntBASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
PCDHGA1Q9Y5H4 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 IKBKGP1-201ENST00000612193 1073 ntBASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PCDHGA1Q9Y5H4 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 MIR6089-201ENST00000616698 64 ntBASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 AL358852.1-201ENST00000623174 1268 ntBASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.94■■□□□ 1.1
PCDHGA1Q9Y5H4 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.93■■□□□ 1.1
PCDHGA1Q9Y5H4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 AC123595.1-201ENST00000440769 1046 ntBASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHGA1Q9Y5H4 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 AC027612.3-201ENST00000413684 1047 ntBASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.91■■□□□ 1.1
PCDHGA1Q9Y5H4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms