Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC020928.2-201ENST00000588717 2197 ntBASIC20.71■□□□□ 0.91
SHANK1Q9Y566 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
SHANK1Q9Y566 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.7■□□□□ 0.91
SHANK1Q9Y566 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.7■□□□□ 0.91
SHANK1Q9Y566 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 DUX4L2-201ENST00000561772 1275 ntBASIC20.7■□□□□ 0.9
SHANK1Q9Y566 AC092171.4-201ENST00000609130 632 ntBASIC20.7■□□□□ 0.9
SHANK1Q9Y566 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 DUX4L6-201ENST00000626483 1275 ntBASIC20.7■□□□□ 0.9
SHANK1Q9Y566 DUX4L1-201ENST00000627662 1275 ntBASIC20.7■□□□□ 0.9
SHANK1Q9Y566 DUX4L8-201ENST00000629013 1275 ntBASIC20.7■□□□□ 0.9
SHANK1Q9Y566 DUX4L3-201ENST00000630187 1275 ntBASIC20.7■□□□□ 0.9
SHANK1Q9Y566 DUX4L7-201ENST00000630678 1275 ntBASIC20.7■□□□□ 0.9
SHANK1Q9Y566 DUX4L5-201ENST00000630834 1275 ntBASIC20.7■□□□□ 0.9
SHANK1Q9Y566 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
SHANK1Q9Y566 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 AC006455.2-201ENST00000429931 906 ntBASIC20.69■□□□□ 0.9
SHANK1Q9Y566 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 AC009102.2-201ENST00000606772 1639 ntBASIC20.69■□□□□ 0.9
SHANK1Q9Y566 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK1Q9Y566 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.68■□□□□ 0.9
SHANK1Q9Y566 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.67■□□□□ 0.9
SHANK1Q9Y566 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK1Q9Y566 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK1Q9Y566 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.67■□□□□ 0.9
SHANK1Q9Y566 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK1Q9Y566 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK1Q9Y566 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHANK1Q9Y566 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.66■□□□□ 0.9
SHANK1Q9Y566 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.66■□□□□ 0.9
SHANK1Q9Y566 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
SHANK1Q9Y566 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.66■□□□□ 0.9
SHANK1Q9Y566 AC136469.2-201ENST00000623944 1028 ntBASIC20.66■□□□□ 0.9
SHANK1Q9Y566 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SHANK1Q9Y566 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.66■□□□□ 0.9
SHANK1Q9Y566 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.66■□□□□ 0.9
SHANK1Q9Y566 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.66■□□□□ 0.9
SHANK1Q9Y566 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.65■□□□□ 0.9
SHANK1Q9Y566 AC233992.3-201ENST00000607491 485 ntBASIC20.65■□□□□ 0.9
SHANK1Q9Y566 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK1Q9Y566 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SHANK1Q9Y566 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK1Q9Y566 BX842568.3-201ENST00000418104 571 ntBASIC20.65■□□□□ 0.9
SHANK1Q9Y566 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SHANK1Q9Y566 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK1Q9Y566 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK1Q9Y566 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK1Q9Y566 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.64■□□□□ 0.89
SHANK1Q9Y566 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK1Q9Y566 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SHANK1Q9Y566 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK1Q9Y566 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.64■□□□□ 0.89
SHANK1Q9Y566 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.63■□□□□ 0.89
SHANK1Q9Y566 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK1Q9Y566 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK1Q9Y566 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK1Q9Y566 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.63■□□□□ 0.89
SHANK1Q9Y566 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK1Q9Y566 ID1-201ENST00000376105 1233 ntBASIC20.63■□□□□ 0.89
SHANK1Q9Y566 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.63■□□□□ 0.89
SHANK1Q9Y566 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHANK1Q9Y566 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.62■□□□□ 0.89
SHANK1Q9Y566 AC027612.3-201ENST00000413684 1047 ntBASIC20.62■□□□□ 0.89
SHANK1Q9Y566 AL137784.2-201ENST00000607332 1000 ntBASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms