Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 LGR4-203ENST00000480977 492 ntTSL 2 BASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 AL136967.2-201ENST00000623968 743 ntBASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.43■■□□□ 1.5
SSX2IPQ9Y2D8 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 AL138724.1-201ENST00000606771 1088 ntBASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SSX2IPQ9Y2D8 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SSX2IPQ9Y2D8 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SSX2IPQ9Y2D8 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.4■■□□□ 1.5
SSX2IPQ9Y2D8 MIR939-201ENST00000401314 82 ntBASIC24.4■■□□□ 1.5
SSX2IPQ9Y2D8 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SSX2IPQ9Y2D8 AC091305.1-201ENST00000479476 895 ntBASIC24.4■■□□□ 1.5
SSX2IPQ9Y2D8 AF213884.3-201ENST00000563833 479 ntBASIC24.4■■□□□ 1.5
SSX2IPQ9Y2D8 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.4■■□□□ 1.5
SSX2IPQ9Y2D8 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.4■■□□□ 1.5
SSX2IPQ9Y2D8 DUSP8P4-201ENST00000399538 1761 ntBASIC24.39■■□□□ 1.5
SSX2IPQ9Y2D8 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.39■■□□□ 1.5
SSX2IPQ9Y2D8 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.39■■□□□ 1.5
SSX2IPQ9Y2D8 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SSX2IPQ9Y2D8 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.39■■□□□ 1.49
SSX2IPQ9Y2D8 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.39■■□□□ 1.49
SSX2IPQ9Y2D8 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC24.39■■□□□ 1.49
SSX2IPQ9Y2D8 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
SSX2IPQ9Y2D8 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 AC105265.2-201ENST00000467189 838 ntBASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SSX2IPQ9Y2D8 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 PTMA-205ENST00000410064 814 ntTSL 2 BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 AP001330.3-201ENST00000520123 633 ntBASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 AC241377.3-202ENST00000626088 1088 ntBASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 AC241585.3-202ENST00000628937 1088 ntBASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 AC245100.8-202ENST00000629247 1058 ntBASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.37■■□□□ 1.49
SSX2IPQ9Y2D8 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
SSX2IPQ9Y2D8 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.36■■□□□ 1.49
SSX2IPQ9Y2D8 AC099791.2-201ENST00000605725 427 ntBASIC24.36■■□□□ 1.49
SSX2IPQ9Y2D8 AC011298.3-201ENST00000615796 283 ntBASIC24.36■■□□□ 1.49
SSX2IPQ9Y2D8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC24.36■■□□□ 1.49
SSX2IPQ9Y2D8 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SSX2IPQ9Y2D8 AL161729.1-201ENST00000604104 1402 ntBASIC24.35■■□□□ 1.49
SSX2IPQ9Y2D8 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.35■■□□□ 1.49
SSX2IPQ9Y2D8 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
SSX2IPQ9Y2D8 SERBP1P1-201ENST00000396021 1160 ntBASIC24.35■■□□□ 1.49
SSX2IPQ9Y2D8 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
SSX2IPQ9Y2D8 MIR4767-201ENST00000582827 78 ntBASIC24.35■■□□□ 1.49
SSX2IPQ9Y2D8 AC009102.2-201ENST00000606772 1639 ntBASIC24.35■■□□□ 1.49
SSX2IPQ9Y2D8 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SSX2IPQ9Y2D8 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.34■■□□□ 1.49
SSX2IPQ9Y2D8 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SSX2IPQ9Y2D8 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SSX2IPQ9Y2D8 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SSX2IPQ9Y2D8 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 RASA4CP-201ENST00000424092 1398 ntBASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 PTCHD3P2-201ENST00000424937 1205 ntBASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 AC026271.2-201ENST00000428091 497 ntBASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 MIR5787-201ENST00000611784 55 ntBASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
SSX2IPQ9Y2D8 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
SSX2IPQ9Y2D8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
SSX2IPQ9Y2D8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms