Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 LINC00526-201ENST00000581067 1875 ntBASIC20.73■□□□□ 0.91
CLN6Q9NWW5 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLN6Q9NWW5 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLN6Q9NWW5 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLN6Q9NWW5 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
CLN6Q9NWW5 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLN6Q9NWW5 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLN6Q9NWW5 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLN6Q9NWW5 MIR639-201ENST00000384974 98 ntBASIC20.71■□□□□ 0.91
CLN6Q9NWW5 AC022413.1-201ENST00000624602 984 ntBASIC20.71■□□□□ 0.91
CLN6Q9NWW5 GUSBP5-202ENST00000510805 1989 ntBASIC20.71■□□□□ 0.91
CLN6Q9NWW5 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.71■□□□□ 0.91
CLN6Q9NWW5 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLN6Q9NWW5 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.7■□□□□ 0.91
CLN6Q9NWW5 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 AC127496.7-201ENST00000625110 1798 ntBASIC20.7■□□□□ 0.9
CLN6Q9NWW5 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLN6Q9NWW5 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 AC007029.1-201ENST00000604183 313 ntBASIC20.69■□□□□ 0.9
CLN6Q9NWW5 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLN6Q9NWW5 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 MIR7108-201ENST00000614319 87 ntBASIC20.68■□□□□ 0.9
CLN6Q9NWW5 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CLN6Q9NWW5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLN6Q9NWW5 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 RAP2CP1-202ENST00000605179 643 ntBASIC20.66■□□□□ 0.9
CLN6Q9NWW5 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 AL161729.1-201ENST00000604104 1402 ntBASIC20.66■□□□□ 0.9
CLN6Q9NWW5 ECEL1P1-201ENST00000373592 1742 ntBASIC20.66■□□□□ 0.9
CLN6Q9NWW5 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CLN6Q9NWW5 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLN6Q9NWW5 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLN6Q9NWW5 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.64■□□□□ 0.9
CLN6Q9NWW5 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms