Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC30■■■□□ 2.39
SHANK3Q9BYB0 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC30■■■□□ 2.39
SHANK3Q9BYB0 AC009086.3-201ENST00000623486 1008 ntBASIC30■■■□□ 2.39
SHANK3Q9BYB0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SHANK3Q9BYB0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30■■■□□ 2.39
SHANK3Q9BYB0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30■■■□□ 2.39
SHANK3Q9BYB0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC29.99■■■□□ 2.39
SHANK3Q9BYB0 AC233992.3-201ENST00000607491 485 ntBASIC29.99■■■□□ 2.39
SHANK3Q9BYB0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SHANK3Q9BYB0 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHANK3Q9BYB0 AC092437.1-201ENST00000624794 1048 ntBASIC29.99■■■□□ 2.39
SHANK3Q9BYB0 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SHANK3Q9BYB0 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 DUX4L2-201ENST00000561772 1275 ntBASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 DUX4L6-201ENST00000626483 1275 ntBASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 DUX4L1-201ENST00000627662 1275 ntBASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 DUX4L8-201ENST00000629013 1275 ntBASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 DUX4L3-201ENST00000630187 1275 ntBASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 DUX4L7-201ENST00000630678 1275 ntBASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 DUX4L5-201ENST00000630834 1275 ntBASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
SHANK3Q9BYB0 AL121749.1-202ENST00000609313 2153 ntBASIC29.97■■■□□ 2.39
SHANK3Q9BYB0 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
SHANK3Q9BYB0 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
SHANK3Q9BYB0 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.97■■■□□ 2.39
SHANK3Q9BYB0 MPST-208ENST00000628507 698 ntTSL 5 BASIC29.97■■■□□ 2.39
SHANK3Q9BYB0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC29.97■■■□□ 2.39
SHANK3Q9BYB0 AL022069.1-201ENST00000568025 1636 ntBASIC29.97■■■□□ 2.39
SHANK3Q9BYB0 MIR3181-201ENST00000578512 73 ntBASIC29.96■■■□□ 2.39
SHANK3Q9BYB0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
SHANK3Q9BYB0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC29.96■■■□□ 2.39
SHANK3Q9BYB0 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC29.96■■■□□ 2.39
SHANK3Q9BYB0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC29.96■■■□□ 2.39
SHANK3Q9BYB0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC29.96■■■□□ 2.39
SHANK3Q9BYB0 DUSP8P4-201ENST00000399538 1761 ntBASIC29.95■■■□□ 2.39
SHANK3Q9BYB0 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.39
SHANK3Q9BYB0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
SHANK3Q9BYB0 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
SHANK3Q9BYB0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC29.95■■■□□ 2.38
SHANK3Q9BYB0 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
SHANK3Q9BYB0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC29.94■■■□□ 2.38
SHANK3Q9BYB0 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC29.94■■■□□ 2.38
SHANK3Q9BYB0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC29.94■■■□□ 2.38
SHANK3Q9BYB0 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
SHANK3Q9BYB0 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC29.94■■■□□ 2.38
SHANK3Q9BYB0 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
SHANK3Q9BYB0 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SHANK3Q9BYB0 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 GTSE1-AS1-202ENST00000623117 1518 ntBASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 AK1-201ENST00000223836 736 ntTSL 3 BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 RARRES2P11-201ENST00000635158 484 ntBASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
SHANK3Q9BYB0 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC29.91■■■□□ 2.38
SHANK3Q9BYB0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SHANK3Q9BYB0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
SHANK3Q9BYB0 LSR-205ENST00000427250 1606 ntTSL 2 BASIC29.91■■■□□ 2.38
SHANK3Q9BYB0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SHANK3Q9BYB0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SHANK3Q9BYB0 GLI3-203ENST00000437480 451 ntTSL 2 BASIC29.9■■■□□ 2.38
SHANK3Q9BYB0 AC012414.1-201ENST00000556676 535 ntBASIC29.9■■■□□ 2.38
SHANK3Q9BYB0 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
SHANK3Q9BYB0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC29.89■■■□□ 2.38
SHANK3Q9BYB0 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
SHANK3Q9BYB0 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.89■■■□□ 2.38
SHANK3Q9BYB0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
SHANK3Q9BYB0 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC29.89■■■□□ 2.38
SHANK3Q9BYB0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.89■■■□□ 2.38
SHANK3Q9BYB0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
SHANK3Q9BYB0 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
SHANK3Q9BYB0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 GRAMD4P2-201ENST00000423297 1097 ntBASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 YBX1P1-201ENST00000445822 960 ntBASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC29.88■■■□□ 2.37
SHANK3Q9BYB0 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SHANK3Q9BYB0 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC29.87■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms