Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.46■□□□□ 0.87
PTP4A1Q93096 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
PTP4A1Q93096 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.46■□□□□ 0.87
PTP4A1Q93096 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTP4A1Q93096 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PTP4A1Q93096 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PTP4A1Q93096 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PTP4A1Q93096 AC004987.1-201ENST00000428627 508 ntBASIC20.45■□□□□ 0.86
PTP4A1Q93096 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTP4A1Q93096 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
PTP4A1Q93096 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTP4A1Q93096 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTP4A1Q93096 ATP5G2P3-201ENST00000429083 425 ntBASIC20.44■□□□□ 0.86
PTP4A1Q93096 DUX4L18-201ENST00000553347 1267 ntBASIC20.44■□□□□ 0.86
PTP4A1Q93096 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.44■□□□□ 0.86
PTP4A1Q93096 AC012354.3-201ENST00000623734 483 ntBASIC20.44■□□□□ 0.86
PTP4A1Q93096 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
PTP4A1Q93096 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTP4A1Q93096 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PTP4A1Q93096 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
PTP4A1Q93096 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.43■□□□□ 0.86
PTP4A1Q93096 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.43■□□□□ 0.86
PTP4A1Q93096 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.43■□□□□ 0.86
PTP4A1Q93096 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
PTP4A1Q93096 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
PTP4A1Q93096 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 AL117328.2-201ENST00000624617 1940 ntBASIC20.43■□□□□ 0.86
PTP4A1Q93096 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
PTP4A1Q93096 AL022069.1-201ENST00000568025 1636 ntBASIC20.42■□□□□ 0.86
PTP4A1Q93096 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTP4A1Q93096 TSPY13P-201ENST00000338964 914 ntBASIC20.42■□□□□ 0.86
PTP4A1Q93096 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTP4A1Q93096 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTP4A1Q93096 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PTP4A1Q93096 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PTP4A1Q93096 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
PTP4A1Q93096 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.41■□□□□ 0.86
PTP4A1Q93096 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PTP4A1Q93096 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.41■□□□□ 0.86
PTP4A1Q93096 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.41■□□□□ 0.86
PTP4A1Q93096 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PTP4A1Q93096 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.41■□□□□ 0.86
PTP4A1Q93096 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PTP4A1Q93096 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PTP4A1Q93096 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PTP4A1Q93096 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.4■□□□□ 0.86
PTP4A1Q93096 AC233723.2-201ENST00000623798 2106 ntBASIC20.4■□□□□ 0.86
PTP4A1Q93096 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PTP4A1Q93096 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.39■□□□□ 0.86
PTP4A1Q93096 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PTP4A1Q93096 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTP4A1Q93096 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.39■□□□□ 0.85
PTP4A1Q93096 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTP4A1Q93096 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.39■□□□□ 0.85
PTP4A1Q93096 AC139795.1-202ENST00000500444 432 ntBASIC20.39■□□□□ 0.85
PTP4A1Q93096 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PTP4A1Q93096 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PTP4A1Q93096 C1orf229-201ENST00000623686 2258 ntBASIC20.39■□□□□ 0.85
PTP4A1Q93096 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PTP4A1Q93096 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PTP4A1Q93096 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTP4A1Q93096 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTP4A1Q93096 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTP4A1Q93096 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
PTP4A1Q93096 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
PTP4A1Q93096 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.38■□□□□ 0.85
PTP4A1Q93096 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
PTP4A1Q93096 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTP4A1Q93096 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.38■□□□□ 0.85
PTP4A1Q93096 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTP4A1Q93096 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTP4A1Q93096 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.37■□□□□ 0.85
PTP4A1Q93096 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.37■□□□□ 0.85
PTP4A1Q93096 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTP4A1Q93096 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms