Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RETREG3Q86VR2 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.72■■□□□ 1.07
RETREG3Q86VR2 GUSBP5-202ENST00000510805 1989 ntBASIC21.72■■□□□ 1.07
RETREG3Q86VR2 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RETREG3Q86VR2 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 LINC00526-201ENST00000581067 1875 ntBASIC21.71■■□□□ 1.07
RETREG3Q86VR2 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.71■■□□□ 1.07
RETREG3Q86VR2 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RETREG3Q86VR2 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 SPCS2P3-201ENST00000500401 656 ntBASIC21.69■■□□□ 1.06
RETREG3Q86VR2 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.69■■□□□ 1.06
RETREG3Q86VR2 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RETREG3Q86VR2 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.68■■□□□ 1.06
RETREG3Q86VR2 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RETREG3Q86VR2 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
RETREG3Q86VR2 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RETREG3Q86VR2 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RETREG3Q86VR2 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RETREG3Q86VR2 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.67■■□□□ 1.06
RETREG3Q86VR2 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RETREG3Q86VR2 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 AL592295.1-201ENST00000400984 884 ntBASIC21.66■■□□□ 1.06
RETREG3Q86VR2 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RETREG3Q86VR2 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.65■■□□□ 1.06
RETREG3Q86VR2 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms