Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC14.35□□□□□ -0.11
LINC00643Q86TS7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LINC00643Q86TS7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LINC00643Q86TS7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
LINC00643Q86TS7 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC14.33□□□□□ -0.11
LINC00643Q86TS7 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
LINC00643Q86TS7 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC14.32□□□□□ -0.12
LINC00643Q86TS7 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 AC242852.2-201ENST00000615738 1807 ntBASIC14.31□□□□□ -0.12
LINC00643Q86TS7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC14.31□□□□□ -0.12
LINC00643Q86TS7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC14.3□□□□□ -0.12
LINC00643Q86TS7 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms