Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP54Q70EL1 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC30.89■■■□□ 2.54
USP54Q70EL1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC30.89■■■□□ 2.54
USP54Q70EL1 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP54Q70EL1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP54Q70EL1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP54Q70EL1 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC30.89■■■□□ 2.53
USP54Q70EL1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
USP54Q70EL1 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
USP54Q70EL1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
USP54Q70EL1 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
USP54Q70EL1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
USP54Q70EL1 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
USP54Q70EL1 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
USP54Q70EL1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC30.88■■■□□ 2.53
USP54Q70EL1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USP54Q70EL1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USP54Q70EL1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
USP54Q70EL1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC30.87■■■□□ 2.53
USP54Q70EL1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC30.87■■■□□ 2.53
USP54Q70EL1 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USP54Q70EL1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
USP54Q70EL1 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USP54Q70EL1 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USP54Q70EL1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC30.87■■■□□ 2.53
USP54Q70EL1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC30.87■■■□□ 2.53
USP54Q70EL1 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USP54Q70EL1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USP54Q70EL1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.87■■■□□ 2.53
USP54Q70EL1 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
USP54Q70EL1 HES6-206ENST00000409574 738 ntTSL 2 BASIC30.86■■■□□ 2.53
USP54Q70EL1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC30.86■■■□□ 2.53
USP54Q70EL1 AC009086.3-201ENST00000623486 1008 ntBASIC30.86■■■□□ 2.53
USP54Q70EL1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC30.86■■■□□ 2.53
USP54Q70EL1 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
USP54Q70EL1 VGF-203ENST00000611537 1622 ntTSL 5 BASIC30.85■■■□□ 2.53
USP54Q70EL1 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
USP54Q70EL1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC30.85■■■□□ 2.53
USP54Q70EL1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
USP54Q70EL1 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC30.85■■■□□ 2.53
USP54Q70EL1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
USP54Q70EL1 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
USP54Q70EL1 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
USP54Q70EL1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC30.84■■■□□ 2.53
USP54Q70EL1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.84■■■□□ 2.53
USP54Q70EL1 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.84■■■□□ 2.53
USP54Q70EL1 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
USP54Q70EL1 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
USP54Q70EL1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC30.84■■■□□ 2.53
USP54Q70EL1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
USP54Q70EL1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC30.84■■■□□ 2.53
USP54Q70EL1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC30.84■■■□□ 2.53
USP54Q70EL1 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
USP54Q70EL1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC30.83■■■□□ 2.53
USP54Q70EL1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC30.82■■■□□ 2.52
USP54Q70EL1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC30.82■■■□□ 2.52
USP54Q70EL1 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC30.82■■■□□ 2.52
USP54Q70EL1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
USP54Q70EL1 SLC47A1P1-202ENST00000449666 945 ntBASIC30.81■■■□□ 2.52
USP54Q70EL1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC30.81■■■□□ 2.52
USP54Q70EL1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
USP54Q70EL1 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
USP54Q70EL1 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
USP54Q70EL1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC30.81■■■□□ 2.52
USP54Q70EL1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
USP54Q70EL1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC30.81■■■□□ 2.52
USP54Q70EL1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
USP54Q70EL1 BX842568.3-201ENST00000418104 571 ntBASIC30.81■■■□□ 2.52
USP54Q70EL1 AC087623.3-201ENST00000607047 1098 ntBASIC30.81■■■□□ 2.52
USP54Q70EL1 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC30.8■■■□□ 2.52
USP54Q70EL1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.8■■■□□ 2.52
USP54Q70EL1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC30.8■■■□□ 2.52
USP54Q70EL1 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
USP54Q70EL1 ANKRD20A6P-201ENST00000618763 204 ntBASIC30.8■■■□□ 2.52
USP54Q70EL1 HLA-L-211ENST00000482052 1765 ntBASIC30.79■■■□□ 2.52
USP54Q70EL1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
USP54Q70EL1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC30.79■■■□□ 2.52
USP54Q70EL1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC30.78■■■□□ 2.52
USP54Q70EL1 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC30.78■■■□□ 2.52
USP54Q70EL1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
USP54Q70EL1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
USP54Q70EL1 GTSE1-AS1-202ENST00000623117 1518 ntBASIC30.78■■■□□ 2.52
USP54Q70EL1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
USP54Q70EL1 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
USP54Q70EL1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
USP54Q70EL1 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC30.78■■■□□ 2.52
USP54Q70EL1 MIR3181-201ENST00000578512 73 ntBASIC30.78■■■□□ 2.52
USP54Q70EL1 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
USP54Q70EL1 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.77■■■□□ 2.52
USP54Q70EL1 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
USP54Q70EL1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
USP54Q70EL1 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC30.77■■■□□ 2.52
USP54Q70EL1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC30.77■■■□□ 2.52
USP54Q70EL1 MPST-208ENST00000628507 698 ntTSL 5 BASIC30.77■■■□□ 2.52
USP54Q70EL1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
USP54Q70EL1 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
USP54Q70EL1 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.52
USP54Q70EL1 AC008764.7-201ENST00000593779 1081 ntBASIC30.76■■■□□ 2.51
USP54Q70EL1 ALDH1A3-203ENST00000557963 1670 ntBASIC30.76■■■□□ 2.51
USP54Q70EL1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms