Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC29.15■■■□□ 2.26
RC3H1Q5TC82 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
RC3H1Q5TC82 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
RC3H1Q5TC82 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC29.15■■■□□ 2.26
RC3H1Q5TC82 KRT18P5-201ENST00000436075 1291 ntBASIC29.15■■■□□ 2.26
RC3H1Q5TC82 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC29.15■■■□□ 2.26
RC3H1Q5TC82 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
RC3H1Q5TC82 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC29.14■■■□□ 2.26
RC3H1Q5TC82 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
RC3H1Q5TC82 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.14■■■□□ 2.26
RC3H1Q5TC82 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
RC3H1Q5TC82 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
RC3H1Q5TC82 AL031602.1-201ENST00000633169 911 ntBASIC29.14■■■□□ 2.26
RC3H1Q5TC82 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC29.14■■■□□ 2.26
RC3H1Q5TC82 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC29.13■■■□□ 2.25
RC3H1Q5TC82 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
RC3H1Q5TC82 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
RC3H1Q5TC82 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC29.13■■■□□ 2.25
RC3H1Q5TC82 NKILA-201ENST00000613231 537 ntTSL 4 BASIC29.13■■■□□ 2.25
RC3H1Q5TC82 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
RC3H1Q5TC82 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC29.12■■■□□ 2.25
RC3H1Q5TC82 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 GTSE1-AS1-202ENST00000623117 1518 ntBASIC29.11■■■□□ 2.25
RC3H1Q5TC82 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
RC3H1Q5TC82 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC29.1■■■□□ 2.25
RC3H1Q5TC82 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
RC3H1Q5TC82 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC29.1■■■□□ 2.25
RC3H1Q5TC82 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DUX4L2-201ENST00000561772 1275 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 AC126544.1-201ENST00000580842 1059 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 AL137784.2-201ENST00000607332 1000 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.1■■■□□ 2.25
RC3H1Q5TC82 AC092437.1-201ENST00000624794 1048 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DUX4L6-201ENST00000626483 1275 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DUX4L1-201ENST00000627662 1275 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DUX4L8-201ENST00000629013 1275 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DUX4L3-201ENST00000630187 1275 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DUX4L7-201ENST00000630678 1275 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DUX4L5-201ENST00000630834 1275 ntBASIC29.1■■■□□ 2.25
RC3H1Q5TC82 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC29.1■■■□□ 2.25
RC3H1Q5TC82 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
RC3H1Q5TC82 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC29.1■■■□□ 2.25
RC3H1Q5TC82 LSR-205ENST00000427250 1606 ntTSL 2 BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 RAB43-208ENST00000615093 783 ntTSL 5 BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC29.09■■■□□ 2.25
RC3H1Q5TC82 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 pRNA.6-201ENST00000610482 90 ntBASIC29.08■■■□□ 2.25
RC3H1Q5TC82 pRNA.5-201ENST00000612139 90 ntBASIC29.08■■■□□ 2.25
RC3H1Q5TC82 pRNA.11-201ENST00000618423 90 ntBASIC29.08■■■□□ 2.25
RC3H1Q5TC82 pRNA.13-201ENST00000619112 90 ntBASIC29.08■■■□□ 2.25
RC3H1Q5TC82 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.08■■■□□ 2.25
RC3H1Q5TC82 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
RC3H1Q5TC82 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC29.07■■■□□ 2.24
RC3H1Q5TC82 AC123595.1-201ENST00000440769 1046 ntBASIC29.07■■■□□ 2.24
RC3H1Q5TC82 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC29.07■■■□□ 2.24
RC3H1Q5TC82 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC29.07■■■□□ 2.24
RC3H1Q5TC82 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC29.07■■■□□ 2.24
RC3H1Q5TC82 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC29.07■■■□□ 2.24
RC3H1Q5TC82 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC29.07■■■□□ 2.24
RC3H1Q5TC82 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC29.06■■■□□ 2.24
RC3H1Q5TC82 TSPY26P-201ENST00000476365 1326 ntBASIC29.06■■■□□ 2.24
RC3H1Q5TC82 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.06■■■□□ 2.24
RC3H1Q5TC82 AC027612.3-201ENST00000413684 1047 ntBASIC29.06■■■□□ 2.24
RC3H1Q5TC82 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC29.06■■■□□ 2.24
RC3H1Q5TC82 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
RC3H1Q5TC82 SLC47A1P1-202ENST00000449666 945 ntBASIC29.06■■■□□ 2.24
RC3H1Q5TC82 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC29.06■■■□□ 2.24
RC3H1Q5TC82 AL358852.1-201ENST00000623174 1268 ntBASIC29.06■■■□□ 2.24
RC3H1Q5TC82 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC29.06■■■□□ 2.24
RC3H1Q5TC82 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC29.06■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms