Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.26■■□□□ 1.15
PTCHD3Q3KNS1 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
PTCHD3Q3KNS1 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD3Q3KNS1 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
PTCHD3Q3KNS1 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD3Q3KNS1 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
PTCHD3Q3KNS1 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
PTCHD3Q3KNS1 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.23■■□□□ 1.15
PTCHD3Q3KNS1 AC092028.1-203ENST00000608262 953 ntBASIC22.23■■□□□ 1.15
PTCHD3Q3KNS1 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD3Q3KNS1 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.22■■□□□ 1.15
PTCHD3Q3KNS1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD3Q3KNS1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD3Q3KNS1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD3Q3KNS1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD3Q3KNS1 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD3Q3KNS1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
PTCHD3Q3KNS1 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD3Q3KNS1 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PTCHD3Q3KNS1 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
PTCHD3Q3KNS1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PTCHD3Q3KNS1 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PTCHD3Q3KNS1 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PTCHD3Q3KNS1 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.2■■□□□ 1.14
PTCHD3Q3KNS1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
PTCHD3Q3KNS1 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.2■■□□□ 1.14
PTCHD3Q3KNS1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.2■■□□□ 1.14
PTCHD3Q3KNS1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
PTCHD3Q3KNS1 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.19■■□□□ 1.14
PTCHD3Q3KNS1 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 ALDH1A3-203ENST00000557963 1670 ntBASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 AC004448.1-201ENST00000458332 883 ntBASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PTCHD3Q3KNS1 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
PTCHD3Q3KNS1 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms