Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.7■□□□□ 0.9
SUMO3P55854 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
SUMO3P55854 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SUMO3P55854 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.7■□□□□ 0.9
SUMO3P55854 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.7■□□□□ 0.9
SUMO3P55854 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SUMO3P55854 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SUMO3P55854 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SUMO3P55854 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SUMO3P55854 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SUMO3P55854 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SUMO3P55854 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SUMO3P55854 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SUMO3P55854 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SUMO3P55854 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SUMO3P55854 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.69■□□□□ 0.9
SUMO3P55854 UNC93B8-201ENST00000511903 705 ntBASIC20.69■□□□□ 0.9
SUMO3P55854 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.69■□□□□ 0.9
SUMO3P55854 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SUMO3P55854 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SUMO3P55854 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.68■□□□□ 0.9
SUMO3P55854 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SUMO3P55854 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.68■□□□□ 0.9
SUMO3P55854 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SUMO3P55854 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SUMO3P55854 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.68■□□□□ 0.9
SUMO3P55854 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SUMO3P55854 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SUMO3P55854 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SUMO3P55854 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SUMO3P55854 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SUMO3P55854 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SUMO3P55854 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SUMO3P55854 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.67■□□□□ 0.9
SUMO3P55854 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SUMO3P55854 KRT16P3-201ENST00000439127 1283 ntBASIC20.67■□□□□ 0.9
SUMO3P55854 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SUMO3P55854 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SUMO3P55854 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SUMO3P55854 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SUMO3P55854 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SUMO3P55854 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SUMO3P55854 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SUMO3P55854 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SUMO3P55854 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SUMO3P55854 MIR6724-1-201ENST00000616420 92 ntBASIC20.66■□□□□ 0.9
SUMO3P55854 MIR6724-2-201ENST00000616483 92 ntBASIC20.66■□□□□ 0.9
SUMO3P55854 MIR6724-4-201ENST00000617390 92 ntBASIC20.66■□□□□ 0.9
SUMO3P55854 MIR6724-3-201ENST00000622482 92 ntBASIC20.66■□□□□ 0.9
SUMO3P55854 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SUMO3P55854 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.66■□□□□ 0.9
SUMO3P55854 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SUMO3P55854 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.66■□□□□ 0.9
SUMO3P55854 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SUMO3P55854 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SUMO3P55854 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SUMO3P55854 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.65■□□□□ 0.9
SUMO3P55854 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SUMO3P55854 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.65■□□□□ 0.9
SUMO3P55854 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.65■□□□□ 0.9
SUMO3P55854 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.64■□□□□ 0.9
SUMO3P55854 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SUMO3P55854 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SUMO3P55854 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SUMO3P55854 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SUMO3P55854 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SUMO3P55854 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.64■□□□□ 0.89
SUMO3P55854 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SUMO3P55854 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SUMO3P55854 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SUMO3P55854 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SUMO3P55854 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SUMO3P55854 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.63■□□□□ 0.89
SUMO3P55854 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.63■□□□□ 0.89
SUMO3P55854 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SUMO3P55854 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SUMO3P55854 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.62■□□□□ 0.89
SUMO3P55854 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SUMO3P55854 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SUMO3P55854 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.62■□□□□ 0.89
SUMO3P55854 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.62■□□□□ 0.89
SUMO3P55854 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SUMO3P55854 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SUMO3P55854 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SUMO3P55854 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SUMO3P55854 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.62■□□□□ 0.89
SUMO3P55854 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SUMO3P55854 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SUMO3P55854 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SUMO3P55854 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SUMO3P55854 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SUMO3P55854 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.61■□□□□ 0.89
SUMO3P55854 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.61■□□□□ 0.89
SUMO3P55854 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SUMO3P55854 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SUMO3P55854 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SUMO3P55854 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SUMO3P55854 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SUMO3P55854 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
SUMO3P55854 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms