Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.4■■□□□ 1.34
CDH4P55283 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CDH4P55283 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CDH4P55283 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.39■■□□□ 1.33
CDH4P55283 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.39■■□□□ 1.33
CDH4P55283 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.39■■□□□ 1.33
CDH4P55283 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
CDH4P55283 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CDH4P55283 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.39■■□□□ 1.33
CDH4P55283 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
CDH4P55283 AC131281.2-201ENST00000520478 145 ntBASIC23.38■■□□□ 1.33
CDH4P55283 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
CDH4P55283 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC23.38■■□□□ 1.33
CDH4P55283 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.38■■□□□ 1.33
CDH4P55283 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CDH4P55283 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CDH4P55283 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.36■■□□□ 1.33
CDH4P55283 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDH4P55283 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDH4P55283 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDH4P55283 AL512631.2-201ENST00000604634 923 ntBASIC23.36■■□□□ 1.33
CDH4P55283 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.36■■□□□ 1.33
CDH4P55283 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
CDH4P55283 AC008406.3-201ENST00000620001 1374 ntBASIC23.36■■□□□ 1.33
CDH4P55283 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
CDH4P55283 AC004812.2-201ENST00000611079 2094 ntBASIC23.36■■□□□ 1.33
CDH4P55283 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
CDH4P55283 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.35■■□□□ 1.33
CDH4P55283 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.35■■□□□ 1.33
CDH4P55283 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.35■■□□□ 1.33
CDH4P55283 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.35■■□□□ 1.33
CDH4P55283 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDH4P55283 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.34■■□□□ 1.33
CDH4P55283 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.34■■□□□ 1.33
CDH4P55283 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.34■■□□□ 1.33
CDH4P55283 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.34■■□□□ 1.33
CDH4P55283 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDH4P55283 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDH4P55283 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDH4P55283 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
CDH4P55283 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDH4P55283 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDH4P55283 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CDH4P55283 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CDH4P55283 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDH4P55283 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.32■■□□□ 1.32
CDH4P55283 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDH4P55283 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
CDH4P55283 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.32■■□□□ 1.32
CDH4P55283 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDH4P55283 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CDH4P55283 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDH4P55283 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDH4P55283 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDH4P55283 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
CDH4P55283 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDH4P55283 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDH4P55283 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDH4P55283 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.31■■□□□ 1.32
CDH4P55283 MIR4466-201ENST00000606121 54 ntBASIC23.31■■□□□ 1.32
CDH4P55283 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDH4P55283 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDH4P55283 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CDH4P55283 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.3■■□□□ 1.32
CDH4P55283 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDH4P55283 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.29■■□□□ 1.32
CDH4P55283 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDH4P55283 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDH4P55283 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.29■■□□□ 1.32
CDH4P55283 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.29■■□□□ 1.32
CDH4P55283 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDH4P55283 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.29■■□□□ 1.32
CDH4P55283 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CDH4P55283 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms