Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
SLC6A11P48066 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.33■■□□□ 1.33
SLC6A11P48066 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SLC6A11P48066 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SLC6A11P48066 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SLC6A11P48066 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
SLC6A11P48066 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.33■■□□□ 1.33
SLC6A11P48066 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.33■■□□□ 1.33
SLC6A11P48066 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.33■■□□□ 1.33
SLC6A11P48066 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.33■■□□□ 1.33
SLC6A11P48066 C17orf82-201ENST00000623772 1530 ntBASIC23.33■■□□□ 1.32
SLC6A11P48066 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SLC6A11P48066 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SLC6A11P48066 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.32■■□□□ 1.32
SLC6A11P48066 RARRES2P6-201ENST00000567333 442 ntBASIC23.32■■□□□ 1.32
SLC6A11P48066 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SLC6A11P48066 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SLC6A11P48066 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.31■■□□□ 1.32
SLC6A11P48066 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
SLC6A11P48066 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SLC6A11P48066 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SLC6A11P48066 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
SLC6A11P48066 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.31■■□□□ 1.32
SLC6A11P48066 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.31■■□□□ 1.32
SLC6A11P48066 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SLC6A11P48066 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.31■■□□□ 1.32
SLC6A11P48066 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SLC6A11P48066 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
SLC6A11P48066 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SLC6A11P48066 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
SLC6A11P48066 USF2-207ENST00000595068 1612 ntTSL 5 BASIC23.3■■□□□ 1.32
SLC6A11P48066 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC6A11P48066 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SLC6A11P48066 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
SLC6A11P48066 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC6A11P48066 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC6A11P48066 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.29■■□□□ 1.32
SLC6A11P48066 AC006455.2-201ENST00000429931 906 ntBASIC23.29■■□□□ 1.32
SLC6A11P48066 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC6A11P48066 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.29■■□□□ 1.32
SLC6A11P48066 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC6A11P48066 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SLC6A11P48066 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.28■■□□□ 1.32
SLC6A11P48066 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.28■■□□□ 1.32
SLC6A11P48066 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.28■■□□□ 1.32
SLC6A11P48066 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.28■■□□□ 1.32
SLC6A11P48066 AC026271.2-201ENST00000428091 497 ntBASIC23.28■■□□□ 1.32
SLC6A11P48066 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.28■■□□□ 1.32
SLC6A11P48066 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SLC6A11P48066 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC23.28■■□□□ 1.32
SLC6A11P48066 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
SLC6A11P48066 AC022211.4-201ENST00000625094 2161 ntBASIC23.28■■□□□ 1.32
SLC6A11P48066 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.28■■□□□ 1.32
SLC6A11P48066 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC6A11P48066 AC135731.1-201ENST00000569415 2548 ntBASIC23.27■■□□□ 1.32
SLC6A11P48066 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
SLC6A11P48066 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.27■■□□□ 1.32
SLC6A11P48066 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
SLC6A11P48066 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC6A11P48066 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SLC6A11P48066 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.27■■□□□ 1.32
SLC6A11P48066 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.27■■□□□ 1.31
SLC6A11P48066 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SLC6A11P48066 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SLC6A11P48066 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
SLC6A11P48066 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.26■■□□□ 1.31
SLC6A11P48066 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SLC6A11P48066 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SLC6A11P48066 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
SLC6A11P48066 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SLC6A11P48066 AC091305.1-201ENST00000479476 895 ntBASIC23.25■■□□□ 1.31
SLC6A11P48066 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.25■■□□□ 1.31
SLC6A11P48066 AC008764.7-201ENST00000593779 1081 ntBASIC23.25■■□□□ 1.31
SLC6A11P48066 CA15P2-201ENST00000611168 834 ntBASIC23.25■■□□□ 1.31
SLC6A11P48066 AC011298.3-201ENST00000615796 283 ntBASIC23.25■■□□□ 1.31
SLC6A11P48066 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SLC6A11P48066 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
SLC6A11P48066 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SLC6A11P48066 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SLC6A11P48066 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
SLC6A11P48066 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SLC6A11P48066 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
SLC6A11P48066 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SLC6A11P48066 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SLC6A11P48066 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.24■■□□□ 1.31
SLC6A11P48066 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SLC6A11P48066 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
SLC6A11P48066 AL138724.1-201ENST00000606771 1088 ntBASIC23.24■■□□□ 1.31
SLC6A11P48066 AC241377.3-202ENST00000626088 1088 ntBASIC23.24■■□□□ 1.31
SLC6A11P48066 AC241585.3-202ENST00000628937 1088 ntBASIC23.24■■□□□ 1.31
SLC6A11P48066 AC245100.8-202ENST00000629247 1058 ntBASIC23.24■■□□□ 1.31
SLC6A11P48066 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SLC6A11P48066 AL161729.1-201ENST00000604104 1402 ntBASIC23.24■■□□□ 1.31
SLC6A11P48066 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.24■■□□□ 1.31
SLC6A11P48066 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SLC6A11P48066 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SLC6A11P48066 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SLC6A11P48066 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SLC6A11P48066 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.23■■□□□ 1.31
SLC6A11P48066 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms