Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
HADHAP40939 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC22.98■■□□□ 1.27
HADHAP40939 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
HADHAP40939 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HADHAP40939 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
HADHAP40939 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
HADHAP40939 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
HADHAP40939 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
HADHAP40939 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HADHAP40939 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
HADHAP40939 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.27
HADHAP40939 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
HADHAP40939 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.97■■□□□ 1.27
HADHAP40939 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.96■■□□□ 1.27
HADHAP40939 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.96■■□□□ 1.27
HADHAP40939 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.96■■□□□ 1.27
HADHAP40939 BX664725.1-201ENST00000438252 379 ntBASIC22.96■■□□□ 1.27
HADHAP40939 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.96■■□□□ 1.27
HADHAP40939 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
HADHAP40939 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.96■■□□□ 1.27
HADHAP40939 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
HADHAP40939 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
HADHAP40939 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
HADHAP40939 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
HADHAP40939 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HADHAP40939 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HADHAP40939 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HADHAP40939 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.94■■□□□ 1.26
HADHAP40939 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.94■■□□□ 1.26
HADHAP40939 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.94■■□□□ 1.26
HADHAP40939 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HADHAP40939 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.94■■□□□ 1.26
HADHAP40939 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.94■■□□□ 1.26
HADHAP40939 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
HADHAP40939 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
HADHAP40939 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.94■■□□□ 1.26
HADHAP40939 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
HADHAP40939 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
HADHAP40939 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.93■■□□□ 1.26
HADHAP40939 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
HADHAP40939 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
HADHAP40939 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
HADHAP40939 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
HADHAP40939 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22.93■■□□□ 1.26
HADHAP40939 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
HADHAP40939 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
HADHAP40939 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.93■■□□□ 1.26
HADHAP40939 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
HADHAP40939 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.93■■□□□ 1.26
HADHAP40939 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.92■■□□□ 1.26
HADHAP40939 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
HADHAP40939 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
HADHAP40939 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.92■■□□□ 1.26
HADHAP40939 Z92544.1-202ENST00000571933 1220 ntBASIC22.92■■□□□ 1.26
HADHAP40939 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.92■■□□□ 1.26
HADHAP40939 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.92■■□□□ 1.26
HADHAP40939 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
HADHAP40939 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
HADHAP40939 AC133561.1-201ENST00000568600 2415 ntBASIC22.92■■□□□ 1.26
HADHAP40939 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
HADHAP40939 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
HADHAP40939 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
HADHAP40939 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.92■■□□□ 1.26
HADHAP40939 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.92■■□□□ 1.26
HADHAP40939 AC021242.3-201ENST00000607598 1377 ntBASIC22.91■■□□□ 1.26
HADHAP40939 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
HADHAP40939 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HADHAP40939 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HADHAP40939 AC004448.1-201ENST00000458332 883 ntBASIC22.91■■□□□ 1.26
HADHAP40939 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.91■■□□□ 1.26
HADHAP40939 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
HADHAP40939 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.91■■□□□ 1.26
HADHAP40939 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
HADHAP40939 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HADHAP40939 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
HADHAP40939 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HADHAP40939 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
HADHAP40939 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
HADHAP40939 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
HADHAP40939 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.9■■□□□ 1.26
HADHAP40939 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.9■■□□□ 1.26
HADHAP40939 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
HADHAP40939 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
HADHAP40939 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
HADHAP40939 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
HADHAP40939 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.9■■□□□ 1.26
HADHAP40939 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
HADHAP40939 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.9■■□□□ 1.26
HADHAP40939 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
HADHAP40939 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
HADHAP40939 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.89■■□□□ 1.26
HADHAP40939 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
HADHAP40939 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.89■■□□□ 1.25
HADHAP40939 KRT125P-201ENST00000546827 989 ntBASIC22.89■■□□□ 1.25
HADHAP40939 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.89■■□□□ 1.25
HADHAP40939 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
HADHAP40939 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
HADHAP40939 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
HADHAP40939 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
HADHAP40939 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms