Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.83■□□□□ 0.93
RFC3P40938 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RFC3P40938 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
RFC3P40938 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFC3P40938 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFC3P40938 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFC3P40938 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.82■□□□□ 0.92
RFC3P40938 UNC93B3-201ENST00000308076 687 ntBASIC20.82■□□□□ 0.92
RFC3P40938 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
RFC3P40938 MIR935-201ENST00000401179 91 ntBASIC20.82■□□□□ 0.92
RFC3P40938 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.82■□□□□ 0.92
RFC3P40938 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.82■□□□□ 0.92
RFC3P40938 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.82■□□□□ 0.92
RFC3P40938 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFC3P40938 PBX2P1-201ENST00000493219 1291 ntBASIC20.82■□□□□ 0.92
RFC3P40938 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.82■□□□□ 0.92
RFC3P40938 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RFC3P40938 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RFC3P40938 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFC3P40938 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RFC3P40938 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RFC3P40938 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
RFC3P40938 AC005837.3-201ENST00000612163 286 ntBASIC20.81■□□□□ 0.92
RFC3P40938 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFC3P40938 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFC3P40938 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RFC3P40938 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFC3P40938 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFC3P40938 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.81■□□□□ 0.92
RFC3P40938 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFC3P40938 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.8■□□□□ 0.92
RFC3P40938 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RFC3P40938 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFC3P40938 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFC3P40938 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.8■□□□□ 0.92
RFC3P40938 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFC3P40938 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.8■□□□□ 0.92
RFC3P40938 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFC3P40938 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.8■□□□□ 0.92
RFC3P40938 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RFC3P40938 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RFC3P40938 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.79■□□□□ 0.92
RFC3P40938 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFC3P40938 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RFC3P40938 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFC3P40938 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFC3P40938 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFC3P40938 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.78■□□□□ 0.92
RFC3P40938 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
RFC3P40938 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFC3P40938 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.78■□□□□ 0.92
RFC3P40938 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFC3P40938 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFC3P40938 AL136162.1-201ENST00000607711 1078 ntBASIC20.78■□□□□ 0.92
RFC3P40938 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFC3P40938 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFC3P40938 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFC3P40938 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
RFC3P40938 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFC3P40938 AC138932.3-201ENST00000567634 1902 ntBASIC20.77■□□□□ 0.92
RFC3P40938 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFC3P40938 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
RFC3P40938 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.77■□□□□ 0.92
RFC3P40938 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RFC3P40938 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RFC3P40938 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFC3P40938 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFC3P40938 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFC3P40938 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.76■□□□□ 0.91
RFC3P40938 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.76■□□□□ 0.91
RFC3P40938 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.76■□□□□ 0.91
RFC3P40938 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RFC3P40938 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RFC3P40938 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
RFC3P40938 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
RFC3P40938 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
RFC3P40938 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RFC3P40938 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFC3P40938 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RFC3P40938 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.75■□□□□ 0.91
RFC3P40938 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFC3P40938 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.75■□□□□ 0.91
RFC3P40938 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.75■□□□□ 0.91
RFC3P40938 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RFC3P40938 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFC3P40938 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RFC3P40938 AC106739.1-201ENST00000617035 715 ntBASIC20.75■□□□□ 0.91
RFC3P40938 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
RFC3P40938 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.74■□□□□ 0.91
RFC3P40938 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
RFC3P40938 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFC3P40938 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RFC3P40938 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
RFC3P40938 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.74■□□□□ 0.91
RFC3P40938 AC020928.2-201ENST00000588717 2197 ntBASIC20.74■□□□□ 0.91
RFC3P40938 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.74■□□□□ 0.91
RFC3P40938 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
RFC3P40938 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFC3P40938 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RFC3P40938 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms