Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC38.85■■■■□ 3.81
CUX1P39880 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC38.85■■■■□ 3.81
CUX1P39880 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC38.85■■■■□ 3.81
CUX1P39880 YBX1P1-201ENST00000445822 960 ntBASIC38.85■■■■□ 3.81
CUX1P39880 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC38.85■■■■□ 3.81
CUX1P39880 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC38.85■■■■□ 3.81
CUX1P39880 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC38.84■■■■□ 3.81
CUX1P39880 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC38.84■■■■□ 3.81
CUX1P39880 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC38.84■■■■□ 3.81
CUX1P39880 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
CUX1P39880 VGF-203ENST00000611537 1622 ntTSL 5 BASIC38.84■■■■□ 3.81
CUX1P39880 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC38.84■■■■□ 3.81
CUX1P39880 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC38.84■■■■□ 3.81
CUX1P39880 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC38.83■■■■□ 3.81
CUX1P39880 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC38.83■■■■□ 3.81
CUX1P39880 CD37-213ENST00000598095 1598 ntTSL 2 BASIC38.83■■■■□ 3.81
CUX1P39880 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC38.83■■■■□ 3.81
CUX1P39880 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC38.83■■■■□ 3.81
CUX1P39880 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC38.82■■■■□ 3.8
CUX1P39880 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC38.82■■■■□ 3.8
CUX1P39880 GRAMD4P2-201ENST00000423297 1097 ntBASIC38.82■■■■□ 3.8
CUX1P39880 SLC47A1P1-202ENST00000449666 945 ntBASIC38.82■■■■□ 3.8
CUX1P39880 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC38.82■■■■□ 3.8
CUX1P39880 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC38.82■■■■□ 3.8
CUX1P39880 AL022069.1-201ENST00000568025 1636 ntBASIC38.81■■■■□ 3.8
CUX1P39880 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC38.81■■■■□ 3.8
CUX1P39880 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC38.81■■■■□ 3.8
CUX1P39880 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC38.81■■■■□ 3.8
CUX1P39880 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC38.81■■■■□ 3.8
CUX1P39880 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC38.81■■■■□ 3.8
CUX1P39880 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC38.81■■■■□ 3.8
CUX1P39880 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
CUX1P39880 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC38.8■■■■□ 3.8
CUX1P39880 AC027612.3-201ENST00000413684 1047 ntBASIC38.8■■■■□ 3.8
CUX1P39880 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC38.8■■■■□ 3.8
CUX1P39880 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC38.8■■■■□ 3.8
CUX1P39880 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC38.8■■■■□ 3.8
CUX1P39880 AC022517.1-201ENST00000592429 346 ntBASIC38.8■■■■□ 3.8
CUX1P39880 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC38.79■■■■□ 3.8
CUX1P39880 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC38.79■■■■□ 3.8
CUX1P39880 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC38.79■■■■□ 3.8
CUX1P39880 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
CUX1P39880 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC38.79■■■■□ 3.8
CUX1P39880 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC38.79■■■■□ 3.8
CUX1P39880 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
CUX1P39880 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC38.79■■■■□ 3.8
CUX1P39880 GTSE1-AS1-202ENST00000623117 1518 ntBASIC38.79■■■■□ 3.8
CUX1P39880 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC38.79■■■■□ 3.8
CUX1P39880 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC38.79■■■■□ 3.8
CUX1P39880 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC38.78■■■■□ 3.8
CUX1P39880 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC38.78■■■■□ 3.8
CUX1P39880 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC38.78■■■■□ 3.8
CUX1P39880 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC38.78■■■■□ 3.8
CUX1P39880 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC38.78■■■■□ 3.8
CUX1P39880 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC38.78■■■■□ 3.8
CUX1P39880 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC38.78■■■■□ 3.8
CUX1P39880 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
CUX1P39880 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC38.78■■■■□ 3.8
CUX1P39880 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
CUX1P39880 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC38.78■■■■□ 3.8
CUX1P39880 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC38.78■■■■□ 3.8
CUX1P39880 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC38.77■■■■□ 3.8
CUX1P39880 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
CUX1P39880 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC38.77■■■■□ 3.8
CUX1P39880 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC38.76■■■■□ 3.8
CUX1P39880 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC38.76■■■■□ 3.8
CUX1P39880 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.8
CUX1P39880 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.8
CUX1P39880 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC38.76■■■■□ 3.8
CUX1P39880 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC38.76■■■■□ 3.8
CUX1P39880 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC38.76■■■■□ 3.8
CUX1P39880 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC38.76■■■■□ 3.79
CUX1P39880 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC38.75■■■■□ 3.79
CUX1P39880 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
CUX1P39880 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC38.74■■■■□ 3.79
CUX1P39880 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC38.74■■■■□ 3.79
CUX1P39880 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
CUX1P39880 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC38.74■■■■□ 3.79
CUX1P39880 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC38.74■■■■□ 3.79
CUX1P39880 RAB43-208ENST00000615093 783 ntTSL 5 BASIC38.74■■■■□ 3.79
CUX1P39880 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
CUX1P39880 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
CUX1P39880 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
CUX1P39880 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC38.74■■■■□ 3.79
CUX1P39880 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC38.74■■■■□ 3.79
CUX1P39880 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC38.73■■■■□ 3.79
CUX1P39880 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
CUX1P39880 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
CUX1P39880 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC38.73■■■■□ 3.79
CUX1P39880 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
CUX1P39880 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC38.73■■■■□ 3.79
CUX1P39880 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
CUX1P39880 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
CUX1P39880 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC38.72■■■■□ 3.79
CUX1P39880 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC38.71■■■■□ 3.79
CUX1P39880 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC38.71■■■■□ 3.79
CUX1P39880 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC38.71■■■■□ 3.79
CUX1P39880 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC38.71■■■■□ 3.79
CUX1P39880 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC38.71■■■■□ 3.79
CUX1P39880 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC38.71■■■■□ 3.79
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms