Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSX2P35548 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSX2P35548 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.72■■□□□ 1.07
MSX2P35548 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.72■■□□□ 1.07
MSX2P35548 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.72■■□□□ 1.07
MSX2P35548 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSX2P35548 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSX2P35548 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSX2P35548 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.71■■□□□ 1.07
MSX2P35548 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSX2P35548 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSX2P35548 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSX2P35548 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSX2P35548 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
MSX2P35548 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSX2P35548 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.71■■□□□ 1.07
MSX2P35548 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
MSX2P35548 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.71■■□□□ 1.07
MSX2P35548 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
MSX2P35548 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSX2P35548 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
MSX2P35548 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSX2P35548 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSX2P35548 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.7■■□□□ 1.06
MSX2P35548 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.7■■□□□ 1.06
MSX2P35548 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSX2P35548 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
MSX2P35548 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.7■■□□□ 1.06
MSX2P35548 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSX2P35548 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.7■■□□□ 1.06
MSX2P35548 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSX2P35548 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSX2P35548 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.69■■□□□ 1.06
MSX2P35548 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSX2P35548 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
MSX2P35548 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSX2P35548 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.69■■□□□ 1.06
MSX2P35548 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.69■■□□□ 1.06
MSX2P35548 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSX2P35548 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSX2P35548 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.68■■□□□ 1.06
MSX2P35548 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
MSX2P35548 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.68■■□□□ 1.06
MSX2P35548 RP9P-202ENST00000450133 1212 ntBASIC21.68■■□□□ 1.06
MSX2P35548 AC093536.1-201ENST00000569153 554 ntBASIC21.68■■□□□ 1.06
MSX2P35548 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.68■■□□□ 1.06
MSX2P35548 AC016575.1-201ENST00000607026 382 ntBASIC21.68■■□□□ 1.06
MSX2P35548 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSX2P35548 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
MSX2P35548 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSX2P35548 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSX2P35548 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSX2P35548 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSX2P35548 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSX2P35548 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSX2P35548 AL137060.1-201ENST00000618151 2648 ntBASIC21.67■■□□□ 1.06
MSX2P35548 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
MSX2P35548 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.67■■□□□ 1.06
MSX2P35548 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSX2P35548 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
MSX2P35548 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.66■■□□□ 1.06
MSX2P35548 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.66■■□□□ 1.06
MSX2P35548 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
MSX2P35548 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
MSX2P35548 AC092296.2-201ENST00000589470 999 ntBASIC21.66■■□□□ 1.06
MSX2P35548 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.66■■□□□ 1.06
MSX2P35548 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSX2P35548 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSX2P35548 ECEL1P1-201ENST00000373592 1742 ntBASIC21.66■■□□□ 1.06
MSX2P35548 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSX2P35548 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSX2P35548 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSX2P35548 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSX2P35548 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSX2P35548 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSX2P35548 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSX2P35548 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.65■■□□□ 1.06
MSX2P35548 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
MSX2P35548 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSX2P35548 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
MSX2P35548 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSX2P35548 AL024507.2-201ENST00000606070 2574 ntBASIC21.64■■□□□ 1.06
MSX2P35548 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSX2P35548 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.64■■□□□ 1.05
MSX2P35548 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.64■■□□□ 1.05
MSX2P35548 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSX2P35548 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSX2P35548 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
MSX2P35548 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
MSX2P35548 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSX2P35548 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
MSX2P35548 AC137767.1-201ENST00000602918 1920 ntBASIC21.63■■□□□ 1.05
MSX2P35548 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.63■■□□□ 1.05
MSX2P35548 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSX2P35548 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSX2P35548 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSX2P35548 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSX2P35548 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
MSX2P35548 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSX2P35548 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms