Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GPX1P1-201ENST00000388829 606 ntBASIC23.99■■□□□ 1.43
VCANP13611 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
VCANP13611 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.99■■□□□ 1.43
VCANP13611 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.99■■□□□ 1.43
VCANP13611 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.99■■□□□ 1.43
VCANP13611 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
VCANP13611 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.99■■□□□ 1.43
VCANP13611 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
VCANP13611 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VCANP13611 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
VCANP13611 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.98■■□□□ 1.43
VCANP13611 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.98■■□□□ 1.43
VCANP13611 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VCANP13611 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VCANP13611 MIR6084-201ENST00000622012 110 ntBASIC23.98■■□□□ 1.43
VCANP13611 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VCANP13611 AC087239.1-201ENST00000622671 572 ntBASIC23.97■■□□□ 1.43
VCANP13611 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.97■■□□□ 1.43
VCANP13611 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.97■■□□□ 1.43
VCANP13611 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VCANP13611 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
VCANP13611 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.97■■□□□ 1.43
VCANP13611 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.97■■□□□ 1.43
VCANP13611 AC016769.1-201ENST00000409132 1010 ntBASIC23.97■■□□□ 1.43
VCANP13611 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.97■■□□□ 1.43
VCANP13611 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.97■■□□□ 1.43
VCANP13611 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
VCANP13611 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.96■■□□□ 1.43
VCANP13611 TPRG1LP1-201ENST00000598702 760 ntBASIC23.96■■□□□ 1.43
VCANP13611 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
VCANP13611 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
VCANP13611 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.96■■□□□ 1.43
VCANP13611 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.96■■□□□ 1.43
VCANP13611 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.96■■□□□ 1.43
VCANP13611 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
VCANP13611 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VCANP13611 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.95■■□□□ 1.43
VCANP13611 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.95■■□□□ 1.43
VCANP13611 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.95■■□□□ 1.43
VCANP13611 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
VCANP13611 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
VCANP13611 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
VCANP13611 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
VCANP13611 AL596275.1-201ENST00000423464 877 ntBASIC23.95■■□□□ 1.42
VCANP13611 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VCANP13611 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.95■■□□□ 1.42
VCANP13611 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VCANP13611 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
VCANP13611 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VCANP13611 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VCANP13611 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VCANP13611 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VCANP13611 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC23.94■■□□□ 1.42
VCANP13611 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VCANP13611 AC012414.1-201ENST00000556676 535 ntBASIC23.93■■□□□ 1.42
VCANP13611 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.93■■□□□ 1.42
VCANP13611 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VCANP13611 AP004607.4-201ENST00000530158 1459 ntBASIC23.93■■□□□ 1.42
VCANP13611 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VCANP13611 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
VCANP13611 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.92■■□□□ 1.42
VCANP13611 RPS2P52-201ENST00000469610 820 ntBASIC23.92■■□□□ 1.42
VCANP13611 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VCANP13611 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.92■■□□□ 1.42
VCANP13611 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.92■■□□□ 1.42
VCANP13611 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
VCANP13611 ST7-205ENST00000393446 2114 ntTSL 5 BASIC23.92■■□□□ 1.42
VCANP13611 MIR3181-201ENST00000578512 73 ntBASIC23.91■■□□□ 1.42
VCANP13611 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.91■■□□□ 1.42
VCANP13611 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
VCANP13611 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.91■■□□□ 1.42
VCANP13611 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
VCANP13611 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.9■■□□□ 1.42
VCANP13611 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.9■■□□□ 1.42
VCANP13611 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
VCANP13611 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VCANP13611 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.9■■□□□ 1.42
VCANP13611 AICDA-202ENST00000537228 667 ntTSL 5 BASIC23.9■■□□□ 1.42
VCANP13611 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VCANP13611 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
VCANP13611 AL138781.1-201ENST00000566567 1274 ntBASIC23.89■■□□□ 1.42
VCANP13611 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
VCANP13611 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
VCANP13611 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.89■■□□□ 1.41
VCANP13611 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.89■■□□□ 1.41
VCANP13611 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
VCANP13611 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.89■■□□□ 1.41
VCANP13611 AC069152.1-201ENST00000438030 544 ntBASIC23.88■■□□□ 1.41
VCANP13611 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VCANP13611 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VCANP13611 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VCANP13611 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VCANP13611 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.88■■□□□ 1.41
VCANP13611 AC137761.2-201ENST00000561729 223 ntBASIC23.88■■□□□ 1.41
VCANP13611 AC145350.3-201ENST00000569033 163 ntBASIC23.88■■□□□ 1.41
VCANP13611 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VCANP13611 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
VCANP13611 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.87■■□□□ 1.41
VCANP13611 AL354811.1-201ENST00000610286 706 ntBASIC23.87■■□□□ 1.41
VCANP13611 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms