Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.77■■□□□ 1.08
SEMA3DO95025 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SEMA3DO95025 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
SEMA3DO95025 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.77■■□□□ 1.08
SEMA3DO95025 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.77■■□□□ 1.08
SEMA3DO95025 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.77■■□□□ 1.08
SEMA3DO95025 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.77■■□□□ 1.08
SEMA3DO95025 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SEMA3DO95025 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
SEMA3DO95025 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.07
SEMA3DO95025 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SEMA3DO95025 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
SEMA3DO95025 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SEMA3DO95025 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SEMA3DO95025 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SEMA3DO95025 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.76■■□□□ 1.07
SEMA3DO95025 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SEMA3DO95025 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
SEMA3DO95025 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
SEMA3DO95025 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SEMA3DO95025 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.75■■□□□ 1.07
SEMA3DO95025 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SEMA3DO95025 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SEMA3DO95025 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.75■■□□□ 1.07
SEMA3DO95025 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.75■■□□□ 1.07
SEMA3DO95025 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.75■■□□□ 1.07
SEMA3DO95025 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
SEMA3DO95025 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SEMA3DO95025 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SEMA3DO95025 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SEMA3DO95025 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SEMA3DO95025 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.75■■□□□ 1.07
SEMA3DO95025 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SEMA3DO95025 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SEMA3DO95025 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.74■■□□□ 1.07
SEMA3DO95025 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SEMA3DO95025 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.74■■□□□ 1.07
SEMA3DO95025 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.74■■□□□ 1.07
SEMA3DO95025 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
SEMA3DO95025 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.74■■□□□ 1.07
SEMA3DO95025 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SEMA3DO95025 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.73■■□□□ 1.07
SEMA3DO95025 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SEMA3DO95025 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
SEMA3DO95025 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.73■■□□□ 1.07
SEMA3DO95025 SNX5-217ENST00000606557 1087 ntBASIC21.73■■□□□ 1.07
SEMA3DO95025 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SEMA3DO95025 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SEMA3DO95025 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SEMA3DO95025 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SEMA3DO95025 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SEMA3DO95025 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
SEMA3DO95025 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SEMA3DO95025 BX664725.1-201ENST00000438252 379 ntBASIC21.72■■□□□ 1.07
SEMA3DO95025 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SEMA3DO95025 RARRES2P1-201ENST00000474487 481 ntBASIC21.72■■□□□ 1.07
SEMA3DO95025 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.72■■□□□ 1.07
SEMA3DO95025 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.72■■□□□ 1.07
SEMA3DO95025 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.72■■□□□ 1.07
SEMA3DO95025 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SEMA3DO95025 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
SEMA3DO95025 AC021242.3-201ENST00000607598 1377 ntBASIC21.72■■□□□ 1.07
SEMA3DO95025 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SEMA3DO95025 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.71■■□□□ 1.07
SEMA3DO95025 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SEMA3DO95025 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SEMA3DO95025 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.71■■□□□ 1.07
SEMA3DO95025 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SEMA3DO95025 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SEMA3DO95025 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.71■■□□□ 1.07
SEMA3DO95025 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.71■■□□□ 1.07
SEMA3DO95025 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.7■■□□□ 1.07
SEMA3DO95025 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SEMA3DO95025 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SEMA3DO95025 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SEMA3DO95025 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.7■■□□□ 1.06
SEMA3DO95025 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SEMA3DO95025 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
SEMA3DO95025 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SEMA3DO95025 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SEMA3DO95025 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SEMA3DO95025 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SEMA3DO95025 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SEMA3DO95025 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SEMA3DO95025 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SEMA3DO95025 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.69■■□□□ 1.06
SEMA3DO95025 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SEMA3DO95025 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
SEMA3DO95025 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SEMA3DO95025 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SEMA3DO95025 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SEMA3DO95025 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SEMA3DO95025 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
SEMA3DO95025 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SEMA3DO95025 Z92544.1-202ENST00000571933 1220 ntBASIC21.68■■□□□ 1.06
SEMA3DO95025 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.68■■□□□ 1.06
SEMA3DO95025 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SEMA3DO95025 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.68■■□□□ 1.06
SEMA3DO95025 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SEMA3DO95025 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms