Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV39A0A0B4J263 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV39A0A0B4J263 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.05■□□□□ 0.64
TRAV39A0A0B4J263 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.05■□□□□ 0.64
TRAV39A0A0B4J263 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.05■□□□□ 0.64
TRAV39A0A0B4J263 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV39A0A0B4J263 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 THA1P-201ENST00000590384 1145 ntBASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
TRAV39A0A0B4J263 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 AC068473.5-201ENST00000616428 2072 ntBASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV39A0A0B4J263 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 AC103834.1-201ENST00000520383 144 ntBASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV39A0A0B4J263 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.02■□□□□ 0.63
TRAV39A0A0B4J263 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRAV39A0A0B4J263 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 MIR4281-201ENST00000580852 62 ntBASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV39A0A0B4J263 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 KRT18P24-201ENST00000344739 1156 ntBASIC19■□□□□ 0.63
TRAV39A0A0B4J263 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 AF131216.4-201ENST00000638924 1588 ntBASIC19■□□□□ 0.63
TRAV39A0A0B4J263 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV39A0A0B4J263 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV39A0A0B4J263 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.99■□□□□ 0.63
TRAV39A0A0B4J263 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.99■□□□□ 0.63
TRAV39A0A0B4J263 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.99■□□□□ 0.63
TRAV39A0A0B4J263 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV39A0A0B4J263 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
TRAV39A0A0B4J263 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
TRAV39A0A0B4J263 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAV39A0A0B4J263 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 ANOS2P-203ENST00000472227 1816 ntBASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 AL161729.1-201ENST00000604104 1402 ntBASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAV39A0A0B4J263 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV39A0A0B4J263 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAV39A0A0B4J263 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TRAV39A0A0B4J263 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.97■□□□□ 0.63
TRAV39A0A0B4J263 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 155.8 ms