Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 RN7SKP230-201ENST00000365642 335 ntBASIC15.23■□□□□ 0.03
PCDH9Q9HC56 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 KRT43P-201ENST00000434019 910 ntBASIC15.23■□□□□ 0.03
PCDH9Q9HC56 C2orf27AP3-201ENST00000434123 579 ntBASIC15.23■□□□□ 0.03
PCDH9Q9HC56 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 FO681548.1-201ENST00000455617 1132 ntBASIC15.23■□□□□ 0.03
PCDH9Q9HC56 TMEM198B-204ENST00000484016 896 ntBASIC15.23■□□□□ 0.03
PCDH9Q9HC56 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AC025279.2-201ENST00000569730 653 ntBASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 AL354718.3-201ENST00000616414 581 ntBASIC15.23■□□□□ 0.03
PCDH9Q9HC56 CR382287.1-201ENST00000623954 586 ntBASIC15.23■□□□□ 0.03
PCDH9Q9HC56 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 CICP16-201ENST00000502609 2813 ntBASIC15.22■□□□□ 0.03
PCDH9Q9HC56 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.22■□□□□ 0.03
PCDH9Q9HC56 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 AC016694.1-201ENST00000434179 700 ntBASIC15.22■□□□□ 0.03
PCDH9Q9HC56 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 FTH1P14-201ENST00000482930 551 ntBASIC15.22■□□□□ 0.03
PCDH9Q9HC56 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 RN7SL48P-201ENST00000579283 293 ntBASIC15.22■□□□□ 0.03
PCDH9Q9HC56 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 AC011498.7-201ENST00000624986 2027 ntBASIC15.22■□□□□ 0.03
PCDH9Q9HC56 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PCDH9Q9HC56 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.21■□□□□ 0.03
PCDH9Q9HC56 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms