Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 TIMM10-201ENST00000257245 680 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 NRSN1-201ENST00000378475 800 ntTSL 3 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AC090142.2-201ENST00000483263 416 ntBASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AC007274.3-201ENST00000619838 385 ntBASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 MEP1AP1-201ENST00000636082 1097 ntBASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 DLX4-206ENST00000611342 1662 ntBASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 TNRC18P3-201ENST00000441896 2691 ntBASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 AC117503.4-201ENST00000623229 1418 ntBASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 KRT18P45-201ENST00000515347 1333 ntBASIC14.41□□□□□ -0.1
COL25A1Q9BXS0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 DHRS7-202ENST00000536410 1194 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AC093072.1-201ENST00000589196 602 ntTSL 4 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 Z69706.1-201ENST00000595428 547 ntBASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 FXYD3-212ENST00000605550 590 ntTSL 4 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 AC015813.5-201ENST00000624641 1514 ntBASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 KRT8P18-201ENST00000413425 1445 ntBASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 GATB-213ENST00000515812 1893 ntTSL 5 BASIC14.4□□□□□ -0.1
COL25A1Q9BXS0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 AC008620.2-201ENST00000510294 1569 ntBASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.39□□□□□ -0.11
COL25A1Q9BXS0 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms