Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 NAT9-224ENST00000583757 583 ntTSL 3 BASIC17.79■□□□□ 0.44
RPAP1Q9BWH6 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RPAP1Q9BWH6 AF254983.2-201ENST00000612331 135 ntBASIC17.79■□□□□ 0.44
RPAP1Q9BWH6 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 RPS2P36-201ENST00000456516 831 ntBASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 AL160314.3-201ENST00000556041 767 ntBASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 DUX4L46-201ENST00000566845 751 ntBASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 AL132994.2-201ENST00000603120 687 ntBASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RPAP1Q9BWH6 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.77■□□□□ 0.44
RPAP1Q9BWH6 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.77■□□□□ 0.43
RPAP1Q9BWH6 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 AC152010.1-201ENST00000415779 2006 ntBASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 AGGF1P1-201ENST00000509500 2073 ntBASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms