Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
IFT140Q96RY7 AC015909.5-201ENST00000624336 2266 ntBASIC23.39■■□□□ 1.34
IFT140Q96RY7 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 AC005332.8-201ENST00000622750 2735 ntBASIC23.39■■□□□ 1.34
IFT140Q96RY7 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
IFT140Q96RY7 AL137077.2-201ENST00000635124 1608 ntBASIC23.39■■□□□ 1.34
IFT140Q96RY7 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
IFT140Q96RY7 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
IFT140Q96RY7 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
IFT140Q96RY7 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 SRPK2P-201ENST00000523408 1100 ntBASIC23.39■■□□□ 1.34
IFT140Q96RY7 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 NAT9-219ENST00000582524 573 ntTSL 4 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC23.39■■□□□ 1.34
IFT140Q96RY7 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
IFT140Q96RY7 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC23.39■■□□□ 1.33
IFT140Q96RY7 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
IFT140Q96RY7 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
IFT140Q96RY7 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
IFT140Q96RY7 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC23.39■■□□□ 1.33
IFT140Q96RY7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
IFT140Q96RY7 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC23.39■■□□□ 1.33
IFT140Q96RY7 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
IFT140Q96RY7 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
IFT140Q96RY7 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
IFT140Q96RY7 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 MEP1AP1-201ENST00000636082 1097 ntBASIC23.38■■□□□ 1.33
IFT140Q96RY7 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 DUT-208ENST00000559540 1441 ntTSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 TMBIM7P-203ENST00000641617 1718 ntBASIC23.38■■□□□ 1.33
IFT140Q96RY7 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
IFT140Q96RY7 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
IFT140Q96RY7 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 RNA5SP420-201ENST00000516997 137 ntBASIC23.37■■□□□ 1.33
IFT140Q96RY7 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 AL512310.5-201ENST00000551999 515 ntBASIC23.37■■□□□ 1.33
IFT140Q96RY7 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 AL590556.2-202ENST00000636906 844 ntBASIC23.37■■□□□ 1.33
IFT140Q96RY7 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC23.37■■□□□ 1.33
IFT140Q96RY7 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
IFT140Q96RY7 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 ASS1P1-201ENST00000402854 1237 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 FTH1P18-201ENST00000412071 549 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 OR7E155P-201ENST00000412208 1014 ntBASIC23.36■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms