Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 INTS4P1-203ENST00000641008 3683 ntBASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 AC007969.1-201ENST00000433675 447 ntBASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 AC022494.1-201ENST00000466044 728 ntBASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 AC099548.2-209ENST00000480264 625 ntBASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 FAM86HP-204ENST00000513466 959 ntBASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.62■□□□□ 0.41
CHMP4CQ96CF2 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 CNN2P10-201ENST00000443067 918 ntBASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 PPY2P-201ENST00000582808 702 ntBASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 AC073413.1-201ENST00000603927 732 ntBASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 TUBB1P2-201ENST00000422712 1306 ntBASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 FKBP4P6-201ENST00000457486 1332 ntBASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 TUBB1P1-201ENST00000503144 1300 ntBASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CHMP4CQ96CF2 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHMP4CQ96CF2 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms