Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 AC006504.5-208ENST00000588784 2401 ntBASIC17.61■□□□□ 0.41
RNF20Q5VTR2 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 ADK-205ENST00000539909 1866 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 AL035633.1-201ENST00000406139 838 ntBASIC17.6■□□□□ 0.41
RNF20Q5VTR2 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 AC136759.1-202ENST00000530858 2194 ntBASIC17.6■□□□□ 0.41
RNF20Q5VTR2 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RNF20Q5VTR2 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.59■□□□□ 0.41
RNF20Q5VTR2 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 AL136309.1-201ENST00000403917 691 ntBASIC17.59■□□□□ 0.41
RNF20Q5VTR2 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 AC008825.2-201ENST00000603374 718 ntBASIC17.59■□□□□ 0.41
RNF20Q5VTR2 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF20Q5VTR2 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RNF20Q5VTR2 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms