Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC010141.1-201ENST00000411585 623 ntBASIC14.99□□□□□ -0.01
USP39Q53GS9 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC14.99□□□□□ -0.01
USP39Q53GS9 ISCA2P1-201ENST00000425548 448 ntBASIC14.99□□□□□ -0.01
USP39Q53GS9 AC012441.2-201ENST00000444843 739 ntBASIC14.99□□□□□ -0.01
USP39Q53GS9 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 POU5F1P2-201ENST00000521750 823 ntBASIC14.99□□□□□ -0.01
USP39Q53GS9 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.99□□□□□ -0.01
USP39Q53GS9 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.99□□□□□ -0.01
USP39Q53GS9 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.99□□□□□ -0.01
USP39Q53GS9 COX6A1P2-201ENST00000620597 330 ntBASIC14.99□□□□□ -0.01
USP39Q53GS9 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
USP39Q53GS9 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.99□□□□□ -0.01
USP39Q53GS9 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.99□□□□□ -0.01
USP39Q53GS9 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
USP39Q53GS9 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
USP39Q53GS9 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
USP39Q53GS9 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
USP39Q53GS9 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
USP39Q53GS9 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
USP39Q53GS9 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.98□□□□□ -0.01
USP39Q53GS9 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.98□□□□□ -0.01
USP39Q53GS9 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
USP39Q53GS9 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.98□□□□□ -0.01
USP39Q53GS9 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.98□□□□□ -0.01
USP39Q53GS9 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.98□□□□□ -0.01
USP39Q53GS9 AC026316.1-201ENST00000398900 414 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.98□□□□□ -0.01
USP39Q53GS9 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.98□□□□□ -0.01
USP39Q53GS9 NOC2LP1-201ENST00000450578 752 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 RCC2P8-201ENST00000502779 1035 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.98□□□□□ -0.01
USP39Q53GS9 AL160314.3-201ENST00000556041 767 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.98□□□□□ -0.01
USP39Q53GS9 MIR4750-201ENST00000584564 56 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 AC008805.1-201ENST00000590892 364 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 AC008825.2-201ENST00000603374 718 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.98□□□□□ -0.01
USP39Q53GS9 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.98□□□□□ -0.01
USP39Q53GS9 AC103691.2-201ENST00000618824 433 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
USP39Q53GS9 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.98□□□□□ -0.01
USP39Q53GS9 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
USP39Q53GS9 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.98□□□□□ -0.01
USP39Q53GS9 E2F3P2-201ENST00000447755 1422 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 MROH4P-201ENST00000431302 1578 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.98□□□□□ -0.01
USP39Q53GS9 ZBED1P1-201ENST00000502364 1930 ntBASIC14.98□□□□□ -0.01
USP39Q53GS9 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
USP39Q53GS9 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.97□□□□□ -0.01
USP39Q53GS9 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
USP39Q53GS9 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
USP39Q53GS9 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.97□□□□□ -0.01
USP39Q53GS9 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
USP39Q53GS9 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.97□□□□□ -0.01
USP39Q53GS9 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
USP39Q53GS9 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.97□□□□□ -0.01
USP39Q53GS9 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms