Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN9AQ15858 BPIFB5P-201ENST00000457066 1099 ntBASIC17.11■□□□□ 0.33
SCN9AQ15858 SLC25A15P3-201ENST00000505530 290 ntBASIC17.11■□□□□ 0.33
SCN9AQ15858 FAM86KP-201ENST00000509817 987 ntBASIC17.11■□□□□ 0.33
SCN9AQ15858 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN9AQ15858 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC17.11■□□□□ 0.33
SCN9AQ15858 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 CYP4F36P-201ENST00000589193 186 ntBASIC17.11■□□□□ 0.33
SCN9AQ15858 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN9AQ15858 COQ4-204ENST00000608951 781 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN9AQ15858 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN9AQ15858 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN9AQ15858 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN9AQ15858 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC17.11■□□□□ 0.33
SCN9AQ15858 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SCN9AQ15858 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.11■□□□□ 0.33
SCN9AQ15858 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SCN9AQ15858 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC17.11■□□□□ 0.33
SCN9AQ15858 ABHD17AP9-201ENST00000561925 548 ntBASIC17.11■□□□□ 0.33
SCN9AQ15858 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC17.11■□□□□ 0.33
SCN9AQ15858 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC17.11■□□□□ 0.33
SCN9AQ15858 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.11■□□□□ 0.33
SCN9AQ15858 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SCN9AQ15858 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SCN9AQ15858 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN9AQ15858 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SCN9AQ15858 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 GOLGA8UP-201ENST00000527159 1755 ntBASIC17.1■□□□□ 0.33
SCN9AQ15858 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SCN9AQ15858 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SCN9AQ15858 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN9AQ15858 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN9AQ15858 RBM4-207ENST00000506523 654 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN9AQ15858 AC022447.6-201ENST00000515522 438 ntBASIC17.1■□□□□ 0.33
SCN9AQ15858 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN9AQ15858 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN9AQ15858 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN9AQ15858 GAS7-216ENST00000583882 553 ntTSL 5 BASIC17.1■□□□□ 0.33
SCN9AQ15858 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC17.1■□□□□ 0.33
SCN9AQ15858 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SCN9AQ15858 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 AC011498.7-201ENST00000624986 2027 ntBASIC17.1■□□□□ 0.33
SCN9AQ15858 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
SCN9AQ15858 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.1■□□□□ 0.33
SCN9AQ15858 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC17.1■□□□□ 0.33
SCN9AQ15858 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
SCN9AQ15858 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SCN9AQ15858 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN9AQ15858 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN9AQ15858 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN9AQ15858 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SCN9AQ15858 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN9AQ15858 PFN2-212ENST00000490975 858 ntTSL 4 BASIC17.09■□□□□ 0.33
SCN9AQ15858 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC17.09■□□□□ 0.33
SCN9AQ15858 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SCN9AQ15858 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN9AQ15858 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN9AQ15858 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.09■□□□□ 0.33
SCN9AQ15858 USP39-220ENST00000613444 2161 ntTSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.09■□□□□ 0.33
SCN9AQ15858 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SCN9AQ15858 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
SCN9AQ15858 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SCN9AQ15858 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms