Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.94□□□□□ -0.34
TFF3Q07654 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
TFF3Q07654 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.94□□□□□ -0.34
TFF3Q07654 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 AC007718.1-201ENST00000621078 280 ntBASIC12.94□□□□□ -0.34
TFF3Q07654 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC12.94□□□□□ -0.34
TFF3Q07654 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
TFF3Q07654 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
TFF3Q07654 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
TFF3Q07654 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
TFF3Q07654 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
TFF3Q07654 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
TFF3Q07654 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
TFF3Q07654 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.94□□□□□ -0.34
TFF3Q07654 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
TFF3Q07654 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 AC087481.3-201ENST00000602886 1894 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 AC074138.1-201ENST00000611182 1303 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 AC144522.1-201ENST00000625111 1658 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 AC106881.1-201ENST00000605849 3329 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
TFF3Q07654 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC12.93□□□□□ -0.34
TFF3Q07654 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
TFF3Q07654 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC12.93□□□□□ -0.34
TFF3Q07654 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.93□□□□□ -0.34
TFF3Q07654 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC12.93□□□□□ -0.34
TFF3Q07654 AL645933.1-201ENST00000440087 609 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 DNM1P30-201ENST00000563586 452 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.93□□□□□ -0.34
TFF3Q07654 MIR3677-201ENST00000578964 60 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC12.93□□□□□ -0.34
TFF3Q07654 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 AL109837.1-201ENST00000603272 613 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 MIR6842-201ENST00000612539 65 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 WT1-AS_6.1-201ENST00000614919 121 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC12.93□□□□□ -0.34
TFF3Q07654 SNX18-202ENST00000343017 3140 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.93□□□□□ -0.34
TFF3Q07654 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.93□□□□□ -0.34
TFF3Q07654 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.93□□□□□ -0.34
TFF3Q07654 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 LILRP1-201ENST00000444199 1370 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 CAP2P1-201ENST00000557743 1390 ntBASIC12.93□□□□□ -0.34
TFF3Q07654 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
TFF3Q07654 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC12.93□□□□□ -0.34
TFF3Q07654 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC12.93□□□□□ -0.34
TFF3Q07654 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
TFF3Q07654 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
TFF3Q07654 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
TFF3Q07654 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
TFF3Q07654 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
TFF3Q07654 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms