Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 AC015813.5-201ENST00000624641 1514 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 U3.5-201ENST00000363448 216 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 FTLP3-201ENST00000427242 528 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 RNA5SP288-201ENST00000516075 93 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 DDX11L8-201ENST00000535849 366 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC10.17□□□□□ -0.78
PRKDCP78527 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC10.17□□□□□ -0.78
PRKDCP78527 METTL22-203ENST00000561758 1312 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
PRKDCP78527 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 AC112693.3-201ENST00000624819 1983 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC10.17□□□□□ -0.78
PRKDCP78527 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 AC015909.5-201ENST00000624336 2266 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 RNF7-202ENST00000393000 805 ntTSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 ABCD1P4-201ENST00000399687 604 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 KRT18P42-201ENST00000505048 1255 ntBASIC10.17□□□□□ -0.78
PRKDCP78527 SELENOK-205ENST00000541726 814 ntAPPRIS ALT1 TSL 5 BASIC10.17□□□□□ -0.78
PRKDCP78527 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC10.17□□□□□ -0.78
PRKDCP78527 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
PRKDCP78527 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
PRKDCP78527 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC10.17□□□□□ -0.78
PRKDCP78527 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 COMMD10-207ENST00000632434 1433 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 KRT18P45-201ENST00000515347 1333 ntBASIC10.16□□□□□ -0.78
PRKDCP78527 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC10.16□□□□□ -0.78
PRKDCP78527 HSD3BP1-201ENST00000286193 1111 ntBASIC10.16□□□□□ -0.78
PRKDCP78527 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
PRKDCP78527 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC10.16□□□□□ -0.78
PRKDCP78527 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC10.16□□□□□ -0.78
PRKDCP78527 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 TUBB2BP1-201ENST00000404155 871 ntBASIC10.16□□□□□ -0.78
PRKDCP78527 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC10.16□□□□□ -0.78
PRKDCP78527 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC10.16□□□□□ -0.78
PRKDCP78527 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC10.16□□□□□ -0.78
PRKDCP78527 CD44-224ENST00000526669 870 ntTSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 MT3-202ENST00000561640 514 ntTSL 3 BASIC10.16□□□□□ -0.78
PRKDCP78527 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 HDGF-202ENST00000368206 960 ntTSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC10.16□□□□□ -0.78
PRKDCP78527 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
PRKDCP78527 HNRNPA3P12-201ENST00000437410 1063 ntBASIC10.16□□□□□ -0.78
PRKDCP78527 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC10.16□□□□□ -0.78
PRKDCP78527 BAK1P2-201ENST00000532665 631 ntBASIC10.16□□□□□ -0.78
PRKDCP78527 MX1-218ENST00000619682 1980 ntTSL 5 BASIC10.16□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms