Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.59■□□□□ 0.25
TPM4P67936 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.59■□□□□ 0.25
TPM4P67936 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TPM4P67936 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TPM4P67936 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 AL136172.1-201ENST00000598590 1394 ntBASIC16.59■□□□□ 0.25
TPM4P67936 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 DRD5P1-201ENST00000456605 1438 ntBASIC16.59■□□□□ 0.25
TPM4P67936 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 AC015818.8-201ENST00000587907 1519 ntBASIC16.59■□□□□ 0.25
TPM4P67936 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM4P67936 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM4P67936 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC16.58■□□□□ 0.25
TPM4P67936 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM4P67936 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM4P67936 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.58■□□□□ 0.25
TPM4P67936 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TPM4P67936 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TPM4P67936 USP31-203ENST00000567975 2142 ntTSL 2 BASIC16.58■□□□□ 0.25
TPM4P67936 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.58■□□□□ 0.25
TPM4P67936 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM4P67936 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM4P67936 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC16.58■□□□□ 0.25
TPM4P67936 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM4P67936 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM4P67936 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.24
TPM4P67936 AC007969.1-201ENST00000433675 447 ntBASIC16.58■□□□□ 0.24
TPM4P67936 CNN2P2-201ENST00000443536 909 ntBASIC16.58■□□□□ 0.24
TPM4P67936 CNN2P3-201ENST00000450201 906 ntBASIC16.58■□□□□ 0.24
TPM4P67936 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
TPM4P67936 AC027369.6-201ENST00000525520 931 ntBASIC16.58■□□□□ 0.24
TPM4P67936 ZNF890P-202ENST00000530367 1156 ntBASIC16.58■□□□□ 0.24
TPM4P67936 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.58■□□□□ 0.24
TPM4P67936 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.58■□□□□ 0.24
TPM4P67936 AL136317.3-201ENST00000618497 906 ntBASIC16.58■□□□□ 0.24
TPM4P67936 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.58■□□□□ 0.24
TPM4P67936 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
TPM4P67936 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.58■□□□□ 0.24
TPM4P67936 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.58■□□□□ 0.24
TPM4P67936 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 SALL4P5-201ENST00000419001 1760 ntBASIC16.58■□□□□ 0.24
TPM4P67936 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.58■□□□□ 0.24
TPM4P67936 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM4P67936 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TPM4P67936 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TPM4P67936 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM4P67936 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
TPM4P67936 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TPM4P67936 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TPM4P67936 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TPM4P67936 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
TPM4P67936 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TPM4P67936 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TPM4P67936 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TPM4P67936 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TPM4P67936 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.57■□□□□ 0.24
TPM4P67936 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.57■□□□□ 0.24
TPM4P67936 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.57■□□□□ 0.24
TPM4P67936 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.57■□□□□ 0.24
TPM4P67936 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms