Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXC9P31274 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
HOXC9P31274 DBP-202ENST00000593500 712 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXC9P31274 SIGLEC22P-201ENST00000599104 714 ntBASIC19.18■□□□□ 0.66
HOXC9P31274 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC19.18■□□□□ 0.66
HOXC9P31274 MIR6756-201ENST00000616240 63 ntBASIC19.18■□□□□ 0.66
HOXC9P31274 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXC9P31274 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXC9P31274 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HOXC9P31274 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXC9P31274 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
HOXC9P31274 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 BAX-205ENST00000391871 687 ntTSL 5 BASIC19.17■□□□□ 0.66
HOXC9P31274 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC19.17■□□□□ 0.66
HOXC9P31274 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 AC068867.1-201ENST00000559855 150 ntBASIC19.17■□□□□ 0.66
HOXC9P31274 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 NDUFB10P1-201ENST00000567319 521 ntBASIC19.17■□□□□ 0.66
HOXC9P31274 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HOXC9P31274 SKA2-205ENST00000580541 689 ntTSL 3 BASIC19.17■□□□□ 0.66
HOXC9P31274 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC19.17■□□□□ 0.66
HOXC9P31274 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC19.17■□□□□ 0.66
HOXC9P31274 AP000322.3-201ENST00000608665 388 ntBASIC19.17■□□□□ 0.66
HOXC9P31274 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HOXC9P31274 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 AL591122.2-201ENST00000624125 1853 ntBASIC19.17■□□□□ 0.66
HOXC9P31274 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC9P31274 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HOXC9P31274 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC9P31274 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC9P31274 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
HOXC9P31274 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC9P31274 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
HOXC9P31274 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 PYY2-201ENST00000315776 282 ntBASIC19.16■□□□□ 0.66
HOXC9P31274 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC9P31274 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
HOXC9P31274 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC19.16■□□□□ 0.66
HOXC9P31274 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 LINC00634-202ENST00000505157 222 ntBASIC19.16■□□□□ 0.66
HOXC9P31274 PTK2-225ENST00000520892 571 ntTSL 4 BASIC19.16■□□□□ 0.66
HOXC9P31274 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 CCT8L1P-201ENST00000465400 1674 ntBASIC19.16■□□□□ 0.66
HOXC9P31274 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
HOXC9P31274 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC9P31274 TEKT4P2-202ENST00000559466 1312 ntBASIC19.16■□□□□ 0.66
HOXC9P31274 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HOXC9P31274 AC064801.2-201ENST00000625052 1303 ntBASIC19.16■□□□□ 0.66
HOXC9P31274 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC9P31274 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC9P31274 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC9P31274 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC9P31274 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC9P31274 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HOXC9P31274 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC19.15■□□□□ 0.66
HOXC9P31274 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HOXC9P31274 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.15■□□□□ 0.66
HOXC9P31274 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HOXC9P31274 CELP-201ENST00000411440 1249 ntTSL 5 BASIC19.15■□□□□ 0.66
HOXC9P31274 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC19.15■□□□□ 0.66
HOXC9P31274 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC19.15■□□□□ 0.66
HOXC9P31274 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms