Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
MSX1P28360 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
MSX1P28360 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 ELK2AP-201ENST00000392510 1007 ntBASIC13.54□□□□□ -0.24
MSX1P28360 AL035696.2-201ENST00000407941 709 ntBASIC13.54□□□□□ -0.24
MSX1P28360 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.54□□□□□ -0.24
MSX1P28360 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.54□□□□□ -0.24
MSX1P28360 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
MSX1P28360 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.54□□□□□ -0.24
MSX1P28360 AKR7A2P1-201ENST00000460134 915 ntBASIC13.54□□□□□ -0.24
MSX1P28360 SCARNA20.5-201ENST00000516991 142 ntBASIC13.54□□□□□ -0.24
MSX1P28360 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.54□□□□□ -0.24
MSX1P28360 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
MSX1P28360 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.54□□□□□ -0.24
MSX1P28360 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 ETFRF1-205ENST00000555711 783 ntTSL 3 BASIC13.54□□□□□ -0.24
MSX1P28360 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.54□□□□□ -0.24
MSX1P28360 EMC4-208ENST00000559078 599 ntTSL 3 BASIC13.54□□□□□ -0.24
MSX1P28360 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.54□□□□□ -0.24
MSX1P28360 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.54□□□□□ -0.24
MSX1P28360 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.54□□□□□ -0.24
MSX1P28360 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.54□□□□□ -0.24
MSX1P28360 AC073413.1-201ENST00000603927 732 ntBASIC13.54□□□□□ -0.24
MSX1P28360 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
MSX1P28360 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.54□□□□□ -0.24
MSX1P28360 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 AC007292.2-201ENST00000593524 1812 ntBASIC13.54□□□□□ -0.24
MSX1P28360 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.54□□□□□ -0.24
MSX1P28360 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.54□□□□□ -0.24
MSX1P28360 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
MSX1P28360 INE2-201ENST00000630399 1874 ntBASIC13.54□□□□□ -0.24
MSX1P28360 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.54□□□□□ -0.24
MSX1P28360 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 AC015818.8-201ENST00000587907 1519 ntBASIC13.54□□□□□ -0.24
MSX1P28360 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
MSX1P28360 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AC020910.5-201ENST00000623668 1865 ntBASIC13.53□□□□□ -0.24
MSX1P28360 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 PUDPP3-201ENST00000445368 636 ntBASIC13.53□□□□□ -0.24
MSX1P28360 AL035414.1-201ENST00000451327 857 ntBASIC13.53□□□□□ -0.24
MSX1P28360 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 AP003171.2-201ENST00000528208 925 ntBASIC13.53□□□□□ -0.24
MSX1P28360 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 PPY2P-201ENST00000582808 702 ntBASIC13.53□□□□□ -0.24
MSX1P28360 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 AC020914.3-201ENST00000594712 304 ntBASIC13.53□□□□□ -0.24
MSX1P28360 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.53□□□□□ -0.24
MSX1P28360 LINC00226-202ENST00000618204 1052 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
MSX1P28360 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
MSX1P28360 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.53□□□□□ -0.24
MSX1P28360 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms