Protein–RNA interactions for Protein: P23510

TNFSF4, Tumor necrosis factor ligand superfamily member 4, humanhuman

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF4P23510 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.67□□□□□ -0.38
TNFSF4P23510 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 MFF-223ENST00000524634 647 ntTSL 2 BASIC12.67□□□□□ -0.38
TNFSF4P23510 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.67□□□□□ -0.38
TNFSF4P23510 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC12.67□□□□□ -0.38
TNFSF4P23510 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC12.67□□□□□ -0.38
TNFSF4P23510 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC12.67□□□□□ -0.38
TNFSF4P23510 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC12.67□□□□□ -0.38
TNFSF4P23510 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC12.67□□□□□ -0.38
TNFSF4P23510 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
TNFSF4P23510 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC12.67□□□□□ -0.38
TNFSF4P23510 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC12.67□□□□□ -0.38
TNFSF4P23510 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 LINC01101-201ENST00000622953 1884 ntBASIC12.67□□□□□ -0.38
TNFSF4P23510 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
TNFSF4P23510 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
TNFSF4P23510 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 AL136172.1-201ENST00000598590 1394 ntBASIC12.67□□□□□ -0.38
TNFSF4P23510 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.67□□□□□ -0.38
TNFSF4P23510 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.67□□□□□ -0.38
TNFSF4P23510 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
TNFSF4P23510 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 TET3-201ENST00000305799 5174 ntTSL 5 BASIC12.66□□□□□ -0.38
TNFSF4P23510 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
TNFSF4P23510 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 LINC00528-201ENST00000600723 2160 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
TNFSF4P23510 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC12.66□□□□□ -0.38
TNFSF4P23510 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC12.66□□□□□ -0.38
TNFSF4P23510 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC12.66□□□□□ -0.38
TNFSF4P23510 Z93015.1-201ENST00000451718 390 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 BNIP3P42-201ENST00000454982 569 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC12.66□□□□□ -0.38
TNFSF4P23510 AC119751.2-201ENST00000504529 210 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 NCK2-206ENST00000522586 490 ntTSL 5 BASIC12.66□□□□□ -0.38
TNFSF4P23510 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 AP006547.1-201ENST00000563435 692 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC12.66□□□□□ -0.38
TNFSF4P23510 EEF1DP1-201ENST00000585891 896 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 BNIP3P29-201ENST00000598302 571 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.66□□□□□ -0.38
TNFSF4P23510 AC011447.5-201ENST00000616168 564 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.66□□□□□ -0.38
TNFSF4P23510 AC087386.2-201ENST00000623212 4637 ntBASIC12.66□□□□□ -0.38
TNFSF4P23510 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC12.66□□□□□ -0.38
TNFSF4P23510 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC12.66□□□□□ -0.38
TNFSF4P23510 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC12.66□□□□□ -0.38
TNFSF4P23510 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
TNFSF4P23510 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
TNFSF4P23510 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms