Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SSR4P1-203ENST00000599569 2260 ntBASIC15.4■□□□□ 0.06
RB1P06400 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC15.4■□□□□ 0.06
RB1P06400 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RB1P06400 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.06
RB1P06400 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
RB1P06400 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 AC112693.3-201ENST00000624819 1983 ntBASIC15.39■□□□□ 0.05
RB1P06400 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 SAT1-201ENST00000379251 801 ntTSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 SAT1-202ENST00000379253 909 ntTSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 SAT1-203ENST00000379254 868 ntTSL 3 BASIC15.39■□□□□ 0.05
RB1P06400 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
RB1P06400 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC15.39■□□□□ 0.05
RB1P06400 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 AC092580.1-201ENST00000433998 658 ntBASIC15.39■□□□□ 0.05
RB1P06400 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC15.39■□□□□ 0.05
RB1P06400 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC15.39■□□□□ 0.05
RB1P06400 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC15.39■□□□□ 0.05
RB1P06400 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
RB1P06400 AC090386.2-201ENST00000623010 1039 ntBASIC15.39■□□□□ 0.05
RB1P06400 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
RB1P06400 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.39■□□□□ 0.05
RB1P06400 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC15.39■□□□□ 0.05
RB1P06400 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RB1P06400 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RB1P06400 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 AL513477.1-201ENST00000602865 2407 ntBASIC15.38■□□□□ 0.05
RB1P06400 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
RB1P06400 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RB1P06400 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RB1P06400 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.38■□□□□ 0.05
RB1P06400 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC15.38■□□□□ 0.05
RB1P06400 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC15.38■□□□□ 0.05
RB1P06400 FAM86B3P-203ENST00000523992 854 ntBASIC15.38■□□□□ 0.05
RB1P06400 AC226150.1-201ENST00000544259 466 ntBASIC15.38■□□□□ 0.05
RB1P06400 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC15.38■□□□□ 0.05
RB1P06400 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.38■□□□□ 0.05
RB1P06400 HKR1-225ENST00000592168 566 ntTSL 4 BASIC15.38■□□□□ 0.05
RB1P06400 AP001527.2-201ENST00000614441 631 ntBASIC15.38■□□□□ 0.05
RB1P06400 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.38■□□□□ 0.05
RB1P06400 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RB1P06400 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC15.38■□□□□ 0.05
RB1P06400 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.38■□□□□ 0.05
RB1P06400 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms