Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
NPHP4O75161 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC20.05■□□□□ 0.8
NPHP4O75161 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP4O75161 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC20.05■□□□□ 0.8
NPHP4O75161 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC20.05■□□□□ 0.8
NPHP4O75161 EEF1DP7-201ENST00000580496 513 ntBASIC20.05■□□□□ 0.8
NPHP4O75161 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
NPHP4O75161 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
NPHP4O75161 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
NPHP4O75161 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 PCDHA1-201ENST00000378133 2726 ntBASIC20.05■□□□□ 0.8
NPHP4O75161 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 GOLGA8UP-201ENST00000527159 1755 ntBASIC20.05■□□□□ 0.8
NPHP4O75161 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NPHP4O75161 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.04■□□□□ 0.8
NPHP4O75161 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
NPHP4O75161 AIG1-203ENST00000367596 559 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP4O75161 AC103563.1-201ENST00000429316 123 ntBASIC20.04■□□□□ 0.8
NPHP4O75161 SNRPD2P2-201ENST00000473818 333 ntBASIC20.04■□□□□ 0.8
NPHP4O75161 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP4O75161 MBP-230ENST00000528160 584 ntTSL 5 BASIC20.04■□□□□ 0.8
NPHP4O75161 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC20.04■□□□□ 0.8
NPHP4O75161 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC20.04■□□□□ 0.8
NPHP4O75161 KRT8P34-201ENST00000577607 1044 ntBASIC20.04■□□□□ 0.8
NPHP4O75161 AL450487.2-201ENST00000615934 407 ntBASIC20.04■□□□□ 0.8
NPHP4O75161 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC20.04■□□□□ 0.8
NPHP4O75161 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 AC020658.6-201ENST00000623564 1870 ntBASIC20.04■□□□□ 0.8
NPHP4O75161 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC20.04■□□□□ 0.8
NPHP4O75161 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
NPHP4O75161 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP4O75161 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP4O75161 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NPHP4O75161 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
NPHP4O75161 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC20.04■□□□□ 0.8
NPHP4O75161 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
NPHP4O75161 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 RHOC-205ENST00000369636 786 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 ACTBP14-201ENST00000411655 1089 ntBASIC20.03■□□□□ 0.8
NPHP4O75161 RPL18AP16-201ENST00000424057 531 ntBASIC20.03■□□□□ 0.8
NPHP4O75161 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 RNU1-80P-201ENST00000459500 161 ntBASIC20.03■□□□□ 0.8
NPHP4O75161 B9D1-206ENST00000461069 923 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 AP003040.1-201ENST00000532044 1024 ntBASIC20.03■□□□□ 0.8
NPHP4O75161 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 AC132812.1-201ENST00000583145 892 ntBASIC20.03■□□□□ 0.8
NPHP4O75161 AL031673.1-201ENST00000611460 466 ntBASIC20.03■□□□□ 0.8
NPHP4O75161 MIR6893-201ENST00000613458 69 ntBASIC20.03■□□□□ 0.8
NPHP4O75161 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
NPHP4O75161 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
NPHP4O75161 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC20.03■□□□□ 0.8
NPHP4O75161 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.03■□□□□ 0.8
NPHP4O75161 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NPHP4O75161 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms